clustersNumber = $clustersNumber; $this->fuzziness = $fuzziness; $this->epsilon = $epsilon; $this->maxIterations = $maxIterations; } protected function initClusters() { // Membership array is a matrix of cluster number by sample counts // We initilize the membership array with random values $dim = $this->space->getDimension(); $this->generateRandomMembership($dim, $this->sampleCount); $this->updateClusters(); } /** * @param int $rows * @param int $cols */ protected function generateRandomMembership(int $rows, int $cols) { $this->membership = []; for ($i = 0; $i < $rows; ++$i) { $row = []; $total = 0.0; for ($k = 0; $k < $cols; ++$k) { $val = rand(1, 5) / 10.0; $row[] = $val; $total += $val; } $this->membership[] = array_map(function ($val) use ($total) { return $val / $total; }, $row); } } protected function updateClusters() { $dim = $this->space->getDimension(); if (!$this->clusters) { $this->clusters = []; for ($i = 0; $i < $this->clustersNumber; ++$i) { $this->clusters[] = new Cluster($this->space, array_fill(0, $dim, 0.0)); } } for ($i = 0; $i < $this->clustersNumber; ++$i) { $cluster = $this->clusters[$i]; $center = $cluster->getCoordinates(); for ($k = 0; $k < $dim; ++$k) { $a = $this->getMembershipRowTotal($i, $k, true); $b = $this->getMembershipRowTotal($i, $k, false); $center[$k] = $a / $b; } $cluster->setCoordinates($center); } } protected function getMembershipRowTotal(int $row, int $col, bool $multiply) { $sum = 0.0; for ($k = 0; $k < $this->sampleCount; ++$k) { $val = pow($this->membership[$row][$k], $this->fuzziness); if ($multiply) { $val *= $this->samples[$k][$col]; } $sum += $val; } return $sum; } protected function updateMembershipMatrix() { for ($i = 0; $i < $this->clustersNumber; ++$i) { for ($k = 0; $k < $this->sampleCount; ++$k) { $distCalc = $this->getDistanceCalc($i, $k); $this->membership[$i][$k] = 1.0 / $distCalc; } } } /** * * @param int $row * @param int $col * @return float */ protected function getDistanceCalc(int $row, int $col) { $sum = 0.0; $distance = new Euclidean(); $dist1 = $distance->distance( $this->clusters[$row]->getCoordinates(), $this->samples[$col] ); for ($j = 0; $j < $this->clustersNumber; ++$j) { $dist2 = $distance->distance( $this->clusters[$j]->getCoordinates(), $this->samples[$col] ); $val = pow($dist1 / $dist2, 2.0 / ($this->fuzziness - 1)); $sum += $val; } return $sum; } /** * The objective is to minimize the distance between all data points * and all cluster centers. This method returns the summation of all * these distances */ protected function getObjective() { $sum = 0.0; $distance = new Euclidean(); for ($i = 0; $i < $this->clustersNumber; ++$i) { $clust = $this->clusters[$i]->getCoordinates(); for ($k = 0; $k < $this->sampleCount; ++$k) { $point = $this->samples[$k]; $sum += $distance->distance($clust, $point); } } return $sum; } /** * @return array */ public function getMembershipMatrix() { return $this->membership; } /** * @param array|Point[] $samples * @return array */ public function cluster(array $samples) { // Initialize variables, clusters and membership matrix $this->sampleCount = count($samples); $this->samples =& $samples; $this->space = new Space(count($samples[0])); $this->initClusters(); // Our goal is minimizing the objective value while // executing the clustering steps at a maximum number of iterations $lastObjective = 0.0; $iterations = 0; do { // Update the membership matrix and cluster centers, respectively $this->updateMembershipMatrix(); $this->updateClusters(); // Calculate the new value of the objective function $objectiveVal = $this->getObjective(); $difference = abs($lastObjective - $objectiveVal); $lastObjective = $objectiveVal; } while ($difference > $this->epsilon && $iterations++ <= $this->maxIterations); // Attach (hard cluster) each data point to the nearest cluster for ($k = 0; $k < $this->sampleCount; ++$k) { $column = array_column($this->membership, $k); arsort($column); reset($column); $i = key($column); $cluster = $this->clusters[$i]; $cluster->attach(new Point($this->samples[$k])); } // Return grouped samples $grouped = []; foreach ($this->clusters as $cluster) { $grouped[] = $cluster->getPoints(); } return $grouped; } }