fit($dataset->getSamples(), $dataset->getTargets()); // Some samples of the Iris data will be checked manually // First 3 and last 3 rows from the original dataset $data = [ [5.1, 3.5, 1.4, 0.2], [4.9, 3.0, 1.4, 0.2], [4.7, 3.2, 1.3, 0.2], [6.5, 3.0, 5.2, 2.0], [6.2, 3.4, 5.4, 2.3], [5.9, 3.0, 5.1, 1.8], ]; $transformed2 = [ [-1.4922092756753, 1.9047102045574], [-1.2576556684358, 1.608414450935], [-1.3487505965419, 1.749846351699], [1.7759343101456, 2.0371552314006], [2.0059819019159, 2.4493123003226], [1.701474913008, 1.9037880473772], ]; $control = []; $control = array_merge($control, array_slice($transformed, 0, 3)); $control = array_merge($control, array_slice($transformed, -3)); $check = function ($row1, $row2) use ($epsilon): void { // Due to the fact that the sign of values can be flipped // during the calculation of eigenValues, we have to compare // absolute value of the values $row1 = array_map('abs', $row1); $row2 = array_map('abs', $row2); self::assertEqualsWithDelta($row1, $row2, $epsilon); }; array_map($check, $control, $transformed2); // Fitted LDA object should be able to return same values again // for each projected row foreach ($data as $i => $row) { $newRow = [$transformed2[$i]]; $newRow2 = $lda->transform($row); array_map($check, $newRow, $newRow2); } } public function testLDAThrowWhenTotalVarianceOutOfRange(): void { $this->expectException(InvalidArgumentException::class); $this->expectExceptionMessage('Total variance can be a value between 0.1 and 0.99'); new LDA(0., null); } public function testLDAThrowWhenNumFeaturesOutOfRange(): void { $this->expectException(InvalidArgumentException::class); $this->expectExceptionMessage('Number of features to be preserved should be greater than 0'); new LDA(null, 0); } public function testLDAThrowWhenParameterNotSpecified(): void { $this->expectException(InvalidArgumentException::class); $this->expectExceptionMessage('Either totalVariance or numFeatures should be specified in order to run the algorithm'); new LDA(); } public function testLDAThrowWhenBothParameterSpecified(): void { $this->expectException(InvalidArgumentException::class); $this->expectExceptionMessage('Either totalVariance or numFeatures should be specified in order to run the algorithm'); new LDA(0.9, 1); } public function testTransformThrowWhenNotFitted(): void { $samples = [ [1, 0], [1, 1], ]; $pca = new LDA(0.9); $this->expectException(InvalidOperationException::class); $this->expectExceptionMessage('LDA has not been fitted with respect to original dataset, please run LDA::fit() first'); $pca->transform($samples); } }