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1d73503958
* Fuzzy C-Means implementation * Update FuzzyCMeans * Rename FuzzyCMeans to FuzzyCMeans.php * Update NaiveBayes.php * Small fix applied to improve training performance array_unique is replaced with array_count_values+array_keys which is way faster * Revert "Small fix applied to improve training performance" This reverts commit c20253f16ac3e8c37d33ecaee28a87cc767e3b7f. * Revert "Revert "Small fix applied to improve training performance"" This reverts commit ea10e136c4c11b71609ccdcaf9999067e4be473e. * Revert "Small fix applied to improve training performance" This reverts commit c20253f16ac3e8c37d33ecaee28a87cc767e3b7f. * First DecisionTree implementation * Revert "First DecisionTree implementation" This reverts commit 4057a08679c26010c39040a48a3e6dad994a1a99. * DecisionTree * FCM Test * FCM Test * DecisionTree Test * Ensemble classifiers: Bagging and RandomForests * test * Fixes for conflicted files * Bagging and RandomForest ensemble algorithms * Changed unit test * Changed unit test * Changed unit test * Bagging and RandomForest ensemble algorithms * Baggging and RandomForest ensemble algorithms * Bagging and RandomForest ensemble algorithms RandomForest algorithm is improved with changes to original DecisionTree * Bagging and RandomForest ensemble algorithms * Slight fix about use of global Exception class * Fixed the error about wrong use of global Exception class * RandomForest code formatting
128 lines
4.8 KiB
PHP
128 lines
4.8 KiB
PHP
<?php
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declare(strict_types=1);
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namespace tests\Classification\Ensemble;
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use Phpml\Classification\Ensemble\Bagging;
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use Phpml\Classification\DecisionTree;
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use Phpml\Classification\NaiveBayes;
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use Phpml\Classification\KNearestNeighbors;
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use Phpml\ModelManager;
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use PHPUnit\Framework\TestCase;
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class BaggingTest extends TestCase
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{
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private $data = [
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['sunny', 85, 85, 'false', 'Dont_play' ],
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['sunny', 80, 90, 'true', 'Dont_play' ],
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['overcast', 83, 78, 'false', 'Play' ],
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['rain', 70, 96, 'false', 'Play' ],
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['rain', 68, 80, 'false', 'Play' ],
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['rain', 65, 70, 'true', 'Dont_play' ],
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['overcast', 64, 65, 'true', 'Play' ],
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['sunny', 72, 95, 'false', 'Dont_play' ],
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['sunny', 69, 70, 'false', 'Play' ],
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['rain', 75, 80, 'false', 'Play' ],
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['sunny', 75, 70, 'true', 'Play' ],
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['overcast', 72, 90, 'true', 'Play' ],
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['overcast', 81, 75, 'false', 'Play' ],
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['rain', 71, 80, 'true', 'Dont_play' ]
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];
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private $extraData = [
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['scorching', 90, 95, 'false', 'Dont_play'],
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['scorching', 0, 0, 'false', 'Dont_play'],
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];
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public function testPredictSingleSample()
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{
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list($data, $targets) = $this->getData($this->data);
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$classifier = $this->getClassifier();
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// Testing with default options
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$classifier->train($data, $targets);
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$this->assertEquals('Dont_play', $classifier->predict(['sunny', 78, 72, 'false']));
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$this->assertEquals('Play', $classifier->predict(['overcast', 60, 60, 'false']));
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$this->assertEquals('Dont_play', $classifier->predict(['rain', 60, 60, 'true']));
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list($data, $targets) = $this->getData($this->extraData);
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$classifier->train($data, $targets);
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$this->assertEquals('Dont_play', $classifier->predict(['scorching', 95, 90, 'true']));
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$this->assertEquals('Play', $classifier->predict(['overcast', 60, 60, 'false']));
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return $classifier;
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}
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public function testSaveAndRestore()
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{
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list($data, $targets) = $this->getData($this->data);
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$classifier = $this->getClassifier(5);
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$classifier->train($data, $targets);
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$testSamples = [['sunny', 78, 72, 'false'], ['overcast', 60, 60, 'false']];
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$predicted = $classifier->predict($testSamples);
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$filename = 'bagging-test-'.rand(100, 999).'-'.uniqid();
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$filepath = tempnam(sys_get_temp_dir(), $filename);
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$modelManager = new ModelManager();
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$modelManager->saveToFile($classifier, $filepath);
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$restoredClassifier = $modelManager->restoreFromFile($filepath);
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$this->assertEquals($classifier, $restoredClassifier);
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$this->assertEquals($predicted, $restoredClassifier->predict($testSamples));
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}
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public function testBaseClassifiers()
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{
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list($data, $targets) = $this->getData($this->data);
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$baseClassifiers = $this->getAvailableBaseClassifiers();
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foreach ($baseClassifiers as $base => $params) {
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$classifier = $this->getClassifier();
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$classifier->setClassifer($base, $params);
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$classifier->train($data, $targets);
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$baseClassifier = new $base(...array_values($params));
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$baseClassifier->train($data, $targets);
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$testData = [['sunny', 78, 72, 'false'], ['overcast', 60, 60, 'false'], ['rain', 60, 60, 'true']];
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foreach ($testData as $test) {
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$result = $classifier->predict($test);
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$baseResult = $classifier->predict($test);
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$this->assertEquals($result, $baseResult);
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}
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}
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}
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protected function getClassifier($numBaseClassifiers = 50)
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{
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$classifier = new Bagging($numBaseClassifiers);
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$classifier->setSubsetRatio(1.0);
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$classifier->setClassifer(DecisionTree::class, ['depth' => 10]);
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return $classifier;
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}
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protected function getAvailableBaseClassifiers()
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{
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return [
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DecisionTree::class => ['depth' => 5],
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NaiveBayes::class => []
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];
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}
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private function getData($input)
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{
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// Populating input data to a size large enough
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// for base classifiers that they can work with a subset of it
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$populated = [];
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for ($i=0; $i<20; $i++) {
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$populated = array_merge($populated, $input);
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}
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shuffle($populated);
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$targets = array_column($populated, 4);
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array_walk($populated, function (&$v) {
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array_splice($v, 4, 1);
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});
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return [$populated, $targets];
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}
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}
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