diff --git a/phpseclib/Crypt/AES.php b/phpseclib/Crypt/AES.php
index 5e7153b3..2bb4d5e8 100644
--- a/phpseclib/Crypt/AES.php
+++ b/phpseclib/Crypt/AES.php
@@ -11,13 +11,13 @@
  * just a wrapper to Rijndael.php you may consider using Rijndael.php instead of
  * to save one include_once().
  *
- * If {@link \phpseclib\Crypt\AES::setKeyLength() setKeyLength()} isn't called, it'll be calculated from
- * {@link \phpseclib\Crypt\AES::setKey() setKey()}.  ie. if the key is 128-bits, the key length will be 128-bits.  If it's 136-bits
- * it'll be null-padded to 192-bits and 192 bits will be the key length until {@link \phpseclib\Crypt\AES::setKey() setKey()}
+ * If {@link self::setKeyLength() setKeyLength()} isn't called, it'll be calculated from
+ * {@link self::setKey() setKey()}.  ie. if the key is 128-bits, the key length will be 128-bits.  If it's 136-bits
+ * it'll be null-padded to 192-bits and 192 bits will be the key length until {@link self::setKey() setKey()}
  * is called, again, at which point, it'll be recalculated.
  *
  * Since \phpseclib\Crypt\AES extends \phpseclib\Crypt\Rijndael, some functions are available to be called that, in the context of AES, don't
- * make a whole lot of sense.  {@link \phpseclib\Crypt\AES::setBlockLength() setBlockLength()}, for instance.  Calling that function,
+ * make a whole lot of sense.  {@link self::setBlockLength() setBlockLength()}, for instance.  Calling that function,
  * however possible, won't do anything (AES has a fixed block length whereas Rijndael has a variable one).
  *
  * Here's a short example of how to use this library:
diff --git a/phpseclib/Crypt/Base.php b/phpseclib/Crypt/Base.php
index b02d8a6f..e1d0b8b2 100644
--- a/phpseclib/Crypt/Base.php
+++ b/phpseclib/Crypt/Base.php
@@ -120,7 +120,7 @@ abstract class Base
     /**
      * The Encryption Mode
      *
-     * @see \phpseclib\Crypt\Base::__construct()
+     * @see self::__construct()
      * @var int
      * @access private
      */
@@ -137,7 +137,7 @@ abstract class Base
     /**
      * The Key
      *
-     * @see \phpseclib\Crypt\Base::setKey()
+     * @see self::setKey()
      * @var string
      * @access private
      */
@@ -146,7 +146,7 @@ abstract class Base
     /**
      * The Initialization Vector
      *
-     * @see \phpseclib\Crypt\Base::setIV()
+     * @see self::setIV()
      * @var string
      * @access private
      */
@@ -155,8 +155,8 @@ abstract class Base
     /**
      * A "sliding" Initialization Vector
      *
-     * @see \phpseclib\Crypt\Base::enableContinuousBuffer()
-     * @see \phpseclib\Crypt\Base::_clearBuffers()
+     * @see self::enableContinuousBuffer()
+     * @see self::_clearBuffers()
      * @var string
      * @access private
      */
@@ -165,8 +165,8 @@ abstract class Base
     /**
      * A "sliding" Initialization Vector
      *
-     * @see \phpseclib\Crypt\Base::enableContinuousBuffer()
-     * @see \phpseclib\Crypt\Base::_clearBuffers()
+     * @see self::enableContinuousBuffer()
+     * @see self::_clearBuffers()
      * @var string
      * @access private
      */
@@ -175,7 +175,7 @@ abstract class Base
     /**
      * Continuous Buffer status
      *
-     * @see \phpseclib\Crypt\Base::enableContinuousBuffer()
+     * @see self::enableContinuousBuffer()
      * @var bool
      * @access private
      */
@@ -184,8 +184,8 @@ abstract class Base
     /**
      * Encryption buffer for CTR, OFB and CFB modes
      *
-     * @see \phpseclib\Crypt\Base::encrypt()
-     * @see \phpseclib\Crypt\Base::_clearBuffers()
+     * @see self::encrypt()
+     * @see self::_clearBuffers()
      * @var array
      * @access private
      */
@@ -194,8 +194,8 @@ abstract class Base
     /**
      * Decryption buffer for CTR, OFB and CFB modes
      *
-     * @see \phpseclib\Crypt\Base::decrypt()
-     * @see \phpseclib\Crypt\Base::_clearBuffers()
+     * @see self::decrypt()
+     * @see self::_clearBuffers()
      * @var array
      * @access private
      */
@@ -207,7 +207,7 @@ abstract class Base
      * The mcrypt resource can be recreated every time something needs to be created or it can be created just once.
      * Since mcrypt operates in continuous mode, by default, it'll need to be recreated when in non-continuous mode.
      *
-     * @see \phpseclib\Crypt\Base::encrypt()
+     * @see self::encrypt()
      * @var resource
      * @access private
      */
@@ -219,7 +219,7 @@ abstract class Base
      * The mcrypt resource can be recreated every time something needs to be created or it can be created just once.
      * Since mcrypt operates in continuous mode, by default, it'll need to be recreated when in non-continuous mode.
      *
-     * @see \phpseclib\Crypt\Base::decrypt()
+     * @see self::decrypt()
      * @var resource
      * @access private
      */
@@ -256,9 +256,9 @@ abstract class Base
      * use a separate ECB-mode mcrypt resource.
      *
      * @link http://phpseclib.sourceforge.net/cfb-demo.phps
-     * @see \phpseclib\Crypt\Base::encrypt()
-     * @see \phpseclib\Crypt\Base::decrypt()
-     * @see \phpseclib\Crypt\Base::_setupMcrypt()
+     * @see self::encrypt()
+     * @see self::decrypt()
+     * @see self::_setupMcrypt()
      * @var resource
      * @access private
      */
@@ -280,7 +280,7 @@ abstract class Base
      * which, typically, depends on the complexity
      * on its internaly Key-expanding algorithm.
      *
-     * @see \phpseclib\Crypt\Base::encrypt()
+     * @see self::encrypt()
      * @var int
      * @access private
      */
@@ -289,9 +289,9 @@ abstract class Base
     /**
      * Does internal cipher state need to be (re)initialized?
      *
-     * @see setKey()
-     * @see setIV()
-     * @see disableContinuousBuffer()
+     * @see self::setKey()
+     * @see self::setIV()
+     * @see self::disableContinuousBuffer()
      * @var bool
      * @access private
      */
@@ -300,7 +300,7 @@ abstract class Base
     /**
      * Padding status
      *
-     * @see \phpseclib\Crypt\Base::enablePadding()
+     * @see self::enablePadding()
      * @var bool
      * @access private
      */
@@ -309,7 +309,7 @@ abstract class Base
     /**
      * Is the mode one that is paddable?
      *
-     * @see \phpseclib\Crypt\Base::__construct()
+     * @see self::__construct()
      * @var bool
      * @access private
      */
@@ -324,9 +324,9 @@ abstract class Base
      * - self::ENGINE_MCRYPT   (fast, php-extension: mcrypt, extension_loaded('mcrypt') required)
      * - self::ENGINE_INTERNAL (slower, pure php-engine, no php-extension required)
      *
-     * @see \phpseclib\Crypt\Base::_setEngine()
-     * @see \phpseclib\Crypt\Base::encrypt()
-     * @see \phpseclib\Crypt\Base::decrypt()
+     * @see self::_setEngine()
+     * @see self::encrypt()
+     * @see self::decrypt()
      * @var int
      * @access private
      */
@@ -335,8 +335,8 @@ abstract class Base
     /**
      * Holds the preferred crypt engine
      *
-     * @see \phpseclib\Crypt\Base::_setEngine()
-     * @see \phpseclib\Crypt\Base::setPreferredEngine()
+     * @see self::_setEngine()
+     * @see self::setPreferredEngine()
      * @var int
      * @access private
      */
@@ -349,7 +349,7 @@ abstract class Base
      *
      * @link http://www.php.net/mcrypt_module_open
      * @link http://www.php.net/mcrypt_list_algorithms
-     * @see \phpseclib\Crypt\Base::_setupMcrypt()
+     * @see self::_setupMcrypt()
      * @var string
      * @access private
      */
@@ -358,7 +358,7 @@ abstract class Base
     /**
      * The openssl specific name of the cipher
      *
-     * Only used if $engine == CRYPT_ENGINE_OPENSSL
+     * Only used if $engine == self::ENGINE_OPENSSL
      *
      * @link http://www.php.net/openssl-get-cipher-methods
      * @var string
@@ -381,7 +381,7 @@ abstract class Base
     /**
      * The default salt used by setPassword()
      *
-     * @see \phpseclib\Crypt\Base::setPassword()
+     * @see self::setPassword()
      * @var string
      * @access private
      */
@@ -393,10 +393,10 @@ abstract class Base
      * Used by encrypt() / decrypt()
      * only if $engine == self::ENGINE_INTERNAL
      *
-     * @see \phpseclib\Crypt\Base::encrypt()
-     * @see \phpseclib\Crypt\Base::decrypt()
-     * @see \phpseclib\Crypt\Base::_setupInlineCrypt()
-     * @see \phpseclib\Crypt\Base::$use_inline_crypt
+     * @see self::encrypt()
+     * @see self::decrypt()
+     * @see self::_setupInlineCrypt()
+     * @see self::$use_inline_crypt
      * @var Callback
      * @access private
      */
@@ -405,9 +405,9 @@ abstract class Base
     /**
      * Holds whether performance-optimized $inline_crypt() can/should be used.
      *
-     * @see \phpseclib\Crypt\Base::encrypt()
-     * @see \phpseclib\Crypt\Base::decrypt()
-     * @see \phpseclib\Crypt\Base::inline_crypt
+     * @see self::encrypt()
+     * @see self::decrypt()
+     * @see self::inline_crypt
      * @var mixed
      * @access private
      */
@@ -416,7 +416,7 @@ abstract class Base
     /**
      * If OpenSSL can be used in ECB but not in CTR we can emulate CTR
      *
-     * @see \phpseclib\Crypt\Base::_openssl_ctr_process()
+     * @see self::_openssl_ctr_process()
      * @var bool
      * @access private
      */
@@ -425,7 +425,7 @@ abstract class Base
     /**
      * Determines what options are passed to openssl_encrypt/decrypt
      *
-     * @see \phpseclib\Crypt\Base::isValidEngine()
+     * @see self::isValidEngine()
      * @var mixed
      * @access private
      */
@@ -466,8 +466,6 @@ abstract class Base
      *
      * - self::MODE_OFB
      *
-     * (or the alias constants of the chosen cipher, for example for AES: CRYPT_AES_MODE_ECB or CRYPT_AES_MODE_CBC ...)
-     *
      * If not explicitly set, self::MODE_CBC will be used.
      *
      * @param int $mode
@@ -685,7 +683,7 @@ abstract class Base
      * strlen($plaintext) will still need to be a multiple of the block size, however, arbitrary values can be added to make it that
      * length.
      *
-     * @see \phpseclib\Crypt\Base::decrypt()
+     * @see self::decrypt()
      * @access public
      * @param string $plaintext
      * @return string $ciphertext
@@ -983,7 +981,7 @@ abstract class Base
      * If strlen($ciphertext) is not a multiple of the block size, null bytes will be added to the end of the string until
      * it is.
      *
-     * @see \phpseclib\Crypt\Base::encrypt()
+     * @see self::encrypt()
      * @access public
      * @param string $ciphertext
      * @return string $plaintext
@@ -1270,12 +1268,12 @@ abstract class Base
      * OpenSSL CTR Processor
      *
      * PHP's OpenSSL bindings do not operate in continuous mode so we'll wrap around it. Since the keystream
-     * for CTR is the same for both encrypting and decrypting this function is re-used by both Crypt_Base::encrypt()
-     * and Crypt_Base::decrypt(). Also, OpenSSL doesn't implement CTR for all of it's symmetric ciphers so this
+     * for CTR is the same for both encrypting and decrypting this function is re-used by both Base::encrypt()
+     * and Base::decrypt(). Also, OpenSSL doesn't implement CTR for all of it's symmetric ciphers so this
      * function will emulate CTR with ECB when necesary.
      *
-     * @see Crypt_Base::encrypt()
-     * @see Crypt_Base::decrypt()
+     * @see self::encrypt()
+     * @see self::decrypt()
      * @param string $plaintext
      * @param string $encryptIV
      * @param array $buffer
@@ -1365,11 +1363,11 @@ abstract class Base
      * OpenSSL OFB Processor
      *
      * PHP's OpenSSL bindings do not operate in continuous mode so we'll wrap around it. Since the keystream
-     * for OFB is the same for both encrypting and decrypting this function is re-used by both Crypt_Base::encrypt()
-     * and Crypt_Base::decrypt().
+     * for OFB is the same for both encrypting and decrypting this function is re-used by both Base::encrypt()
+     * and Base::decrypt().
      *
-     * @see Crypt_Base::encrypt()
-     * @see Crypt_Base::decrypt()
+     * @see self::encrypt()
+     * @see self::decrypt()
      * @param string $plaintext
      * @param string $encryptIV
      * @param array $buffer
@@ -1450,7 +1448,7 @@ abstract class Base
      * away characters that shouldn't be stripped away. (SSH knows how many bytes are added because the length is
      * transmitted separately)
      *
-     * @see \phpseclib\Crypt\Base::disablePadding()
+     * @see self::disablePadding()
      * @access public
      */
     function enablePadding()
@@ -1461,7 +1459,7 @@ abstract class Base
     /**
      * Do not pad packets.
      *
-     * @see \phpseclib\Crypt\Base::enablePadding()
+     * @see self::enablePadding()
      * @access public
      */
     function disablePadding()
@@ -1503,7 +1501,7 @@ abstract class Base
      * continuous buffers not be used.  They do offer better security and are, in fact, sometimes required (SSH uses them),
      * however, they are also less intuitive and more likely to cause you problems.
      *
-     * @see \phpseclib\Crypt\Base::disableContinuousBuffer()
+     * @see self::disableContinuousBuffer()
      * @access public
      * @internal Could, but not must, extend by the child Crypt_* class
      */
@@ -1523,7 +1521,7 @@ abstract class Base
      *
      * The default behavior.
      *
-     * @see \phpseclib\Crypt\Base::enableContinuousBuffer()
+     * @see self::enableContinuousBuffer()
      * @access public
      * @internal Could, but not must, extend by the child Crypt_* class
      */
@@ -1545,7 +1543,7 @@ abstract class Base
     /**
      * Test for engine validity
      *
-     * @see \phpseclib\Crypt\Base::Crypt_Base()
+     * @see self::__construct()
      * @param int $engine
      * @access public
      * @return bool
@@ -1612,7 +1610,7 @@ abstract class Base
      *
      * If the preferred crypt engine is not available the fastest available one will be used
      *
-     * @see \phpseclib\Crypt\Base::Crypt_Base()
+     * @see self::__construct()
      * @param int $engine
      * @access public
      */
@@ -1634,7 +1632,7 @@ abstract class Base
     /**
      * Returns the engine currently being utilized
      *
-     * @see \phpseclib\Crypt\Base::_setEngine()
+     * @see self::_setEngine()
      * @access public
      */
     function getEngine()
@@ -1645,7 +1643,7 @@ abstract class Base
     /**
      * Sets the engine as appropriate
      *
-     * @see \phpseclib\Crypt\Base::Crypt_Base()
+     * @see self::__construct()
      * @access private
      */
     function _setEngine()
@@ -1713,7 +1711,7 @@ abstract class Base
      *
      * Note: Must extend by the child \phpseclib\Crypt\* class
      *
-     * @see \phpseclib\Crypt\Base::_setup()
+     * @see self::_setup()
      * @access private
      */
     abstract function _setupKey();
@@ -1735,9 +1733,9 @@ abstract class Base
      *
      * - First run of encrypt() / decrypt() with no init-settings
      *
-     * @see setKey()
-     * @see setIV()
-     * @see disableContinuousBuffer()
+     * @see self::setKey()
+     * @see self::setIV()
+     * @see self::disableContinuousBuffer()
      * @access private
      * @internal _setup() is always called before en/decryption.
      * @internal Could, but not must, extend by the child Crypt_* class
@@ -1769,9 +1767,9 @@ abstract class Base
      *
      * - First run of encrypt() / decrypt()
      *
-     * @see setKey()
-     * @see setIV()
-     * @see disableContinuousBuffer()
+     * @see self::setKey()
+     * @see self::setIV()
+     * @see self::disableContinuousBuffer()
      * @access private
      * @internal Could, but not must, extend by the child Crypt_* class
      */
@@ -1816,7 +1814,7 @@ abstract class Base
      * If padding is disabled and $text is not a multiple of the blocksize, the string will be padded regardless
      * and padding will, hence forth, be enabled.
      *
-     * @see \phpseclib\Crypt\Base::_unpad()
+     * @see self::_unpad()
      * @param string $text
      * @access private
      * @return string
@@ -1845,7 +1843,7 @@ abstract class Base
      * If padding is enabled and the reported padding length is invalid the encryption key will be assumed to be wrong
      * and false will be returned.
      *
-     * @see \phpseclib\Crypt\Base::_pad()
+     * @see self::_pad()
      * @param string $text
      * @access private
      * @return string
@@ -1925,8 +1923,8 @@ abstract class Base
     /**
      * Increment the current string
      *
-     * @see \phpseclib\Crypt\Base::decrypt()
-     * @see \phpseclib\Crypt\Base::encrypt()
+     * @see self::decrypt()
+     * @see self::encrypt()
      * @param string $var
      * @access private
      */
@@ -2012,10 +2010,10 @@ abstract class Base
      *       - The callback function should not use the 'return' statement, but en/decrypt'ing the content of $in only
      *
      *
-     * @see \phpseclib\Crypt\Base::_setup()
-     * @see \phpseclib\Crypt\Base::_createInlineCryptFunction()
-     * @see \phpseclib\Crypt\Base::encrypt()
-     * @see \phpseclib\Crypt\Base::decrypt()
+     * @see self::_setup()
+     * @see self::_createInlineCryptFunction()
+     * @see self::encrypt()
+     * @see self::decrypt()
      * @access private
      * @internal If a Crypt_* class providing inline crypting it must extend _setupInlineCrypt()
      */
@@ -2134,9 +2132,9 @@ abstract class Base
      *    );
      *    </code>
      *
-     * @see \phpseclib\Crypt\Base::_setupInlineCrypt()
-     * @see \phpseclib\Crypt\Base::encrypt()
-     * @see \phpseclib\Crypt\Base::decrypt()
+     * @see self::_setupInlineCrypt()
+     * @see self::encrypt()
+     * @see self::decrypt()
      * @param array $cipher_code
      * @access private
      * @return string (the name of the created callback function)
@@ -2517,7 +2515,7 @@ abstract class Base
     /**
      * Generates a digest from $bytes
      *
-     * @see _setupInlineCrypt()
+     * @see self::_setupInlineCrypt()
      * @access private
      * @param $bytes
      * @return string
diff --git a/phpseclib/Crypt/Blowfish.php b/phpseclib/Crypt/Blowfish.php
index 6d9df3d7..138afe53 100644
--- a/phpseclib/Crypt/Blowfish.php
+++ b/phpseclib/Crypt/Blowfish.php
@@ -467,7 +467,7 @@ class Blowfish extends Base
         $lambda_functions =& self::_getLambdaFunctions();
 
         // We create max. 10 hi-optimized code for memory reason. Means: For each $key one ultra fast inline-crypt function.
-        // (Currently, for Crypt_Blowfish, one generated $lambda_function cost on php5.5@32bit ~100kb unfreeable mem and ~180kb on php5.5@64bit)
+        // (Currently, for Blowfish, one generated $lambda_function cost on php5.5@32bit ~100kb unfreeable mem and ~180kb on php5.5@64bit)
         // After that, we'll still create very fast optimized code but not the hi-ultimative code, for each $mode one.
         $gen_hi_opt_code = (bool)(count($lambda_functions) < 10);
 
diff --git a/phpseclib/Crypt/DES.php b/phpseclib/Crypt/DES.php
index 23f9045b..93e583a7 100644
--- a/phpseclib/Crypt/DES.php
+++ b/phpseclib/Crypt/DES.php
@@ -124,8 +124,8 @@ class DES extends Base
      *
      * Used only if $engine == self::ENGINE_INTERNAL
      *
-     * @see \phpseclib\Crypt\DES::_setupKey()
-     * @see \phpseclib\Crypt\DES::_processBlock()
+     * @see self::_setupKey()
+     * @see self::_processBlock()
      * @var int
      * @access private
      */
@@ -134,7 +134,7 @@ class DES extends Base
     /**
      * max possible size of $key
      *
-     * @see \phpseclib\Crypt\DES::setKey()
+     * @see self::setKey()
      * @var string
      * @access private
      */
@@ -143,7 +143,7 @@ class DES extends Base
     /**
      * The Key Schedule
      *
-     * @see \phpseclib\Crypt\DES::_setupKey()
+     * @see self::_setupKey()
      * @var array
      * @access private
      */
@@ -156,8 +156,8 @@ class DES extends Base
      * with each byte containing all bits in the same state as the
      * corresponding bit in the index value.
      *
-     * @see \phpseclib\Crypt\DES::_processBlock()
-     * @see \phpseclib\Crypt\DES::_setupKey()
+     * @see self::_processBlock()
+     * @see self::_setupKey()
      * @var array
      * @access private
      */
@@ -634,7 +634,7 @@ class DES extends Base
      *
      * @see \phpseclib\Crypt\Base::_encryptBlock()
      * @see \phpseclib\Crypt\Base::encrypt()
-     * @see \phpseclib\Crypt\DES::encrypt()
+     * @see self::encrypt()
      * @access private
      * @param string $in
      * @return string
@@ -649,7 +649,7 @@ class DES extends Base
      *
      * @see \phpseclib\Crypt\Base::_decryptBlock()
      * @see \phpseclib\Crypt\Base::decrypt()
-     * @see \phpseclib\Crypt\DES::decrypt()
+     * @see self::decrypt()
      * @access private
      * @param string $in
      * @return string
@@ -666,8 +666,8 @@ class DES extends Base
      * {@link http://en.wikipedia.org/wiki/Image:Feistel.png Feistel.png} to get a general
      * idea of what this function does.
      *
-     * @see \phpseclib\Crypt\DES::_encryptBlock()
-     * @see \phpseclib\Crypt\DES::_decryptBlock()
+     * @see self::_encryptBlock()
+     * @see self::_decryptBlock()
      * @access private
      * @param string $block
      * @param int $mode
@@ -1299,8 +1299,8 @@ class DES extends Base
         $des_rounds = $this->des_rounds;
 
         // We create max. 10 hi-optimized code for memory reason. Means: For each $key one ultra fast inline-crypt function.
-        // (Currently, for Crypt_DES,       one generated $lambda_function cost on php5.5@32bit ~135kb unfreeable mem and ~230kb on php5.5@64bit)
-        // (Currently, for Crypt_TripleDES, one generated $lambda_function cost on php5.5@32bit ~240kb unfreeable mem and ~340kb on php5.5@64bit)
+        // (Currently, for DES, one generated $lambda_function cost on php5.5@32bit ~135kb unfreeable mem and ~230kb on php5.5@64bit)
+        // (Currently, for TripleDES, one generated $lambda_function cost on php5.5@32bit ~240kb unfreeable mem and ~340kb on php5.5@64bit)
         // After that, we'll still create very fast optimized code but not the hi-ultimative code, for each $mode one
         $gen_hi_opt_code = (bool)( count($lambda_functions) < 10 );
 
diff --git a/phpseclib/Crypt/Hash.php b/phpseclib/Crypt/Hash.php
index c8ca476a..7047ae2a 100644
--- a/phpseclib/Crypt/Hash.php
+++ b/phpseclib/Crypt/Hash.php
@@ -7,7 +7,7 @@
  *
  * md2, md5, md5-96, sha1, sha1-96, sha256, sha256-96, sha384, and sha512, sha512-96
  *
- * If {@link \phpseclib\Crypt\Hash::setKey() setKey()} is called, {@link \phpseclib\Crypt\Hash::hash() hash()} will return the HMAC as opposed to
+ * If {@link self::setKey() setKey()} is called, {@link self::hash() hash()} will return the HMAC as opposed to
  * the hash.  If no valid algorithm is provided, sha1 will be used.
  *
  * PHP version 5
@@ -70,7 +70,7 @@ class Hash
     /**
      * Hash Parameter
      *
-     * @see \phpseclib\Crypt\Hash::setHash()
+     * @see self::setHash()
      * @var int
      * @access private
      */
@@ -79,7 +79,7 @@ class Hash
     /**
      * Byte-length of compression blocks / key (Internal HMAC)
      *
-     * @see \phpseclib\Crypt\Hash::setAlgorithm()
+     * @see self::setAlgorithm()
      * @var int
      * @access private
      */
@@ -88,7 +88,7 @@ class Hash
     /**
      * Byte-length of hash output (Internal HMAC)
      *
-     * @see \phpseclib\Crypt\Hash::setHash()
+     * @see self::setHash()
      * @var int
      * @access private
      */
@@ -97,7 +97,7 @@ class Hash
     /**
      * Hash Algorithm
      *
-     * @see \phpseclib\Crypt\Hash::setHash()
+     * @see self::setHash()
      * @var string
      * @access private
      */
@@ -106,7 +106,7 @@ class Hash
     /**
      * Key
      *
-     * @see \phpseclib\Crypt\Hash::setKey()
+     * @see self::setKey()
      * @var string
      * @access private
      */
@@ -115,7 +115,7 @@ class Hash
     /**
      * Outer XOR (Internal HMAC)
      *
-     * @see \phpseclib\Crypt\Hash::setKey()
+     * @see self::setKey()
      * @var string
      * @access private
      */
@@ -124,7 +124,7 @@ class Hash
     /**
      * Inner XOR (Internal HMAC)
      *
-     * @see \phpseclib\Crypt\Hash::setKey()
+     * @see self::setKey()
      * @var string
      * @access private
      */
@@ -741,7 +741,7 @@ class Hash
      * @access private
      * @param int $int
      * @param int $amt
-     * @see _sha256()
+     * @see self::_sha256()
      * @return int
      */
     function _rightRotate($int, $amt)
@@ -757,7 +757,7 @@ class Hash
      * @access private
      * @param int $int
      * @param int $amt
-     * @see _sha256()
+     * @see self::_sha256()
      * @return int
      */
     function _rightShift($int, $amt)
@@ -771,7 +771,7 @@ class Hash
      *
      * @access private
      * @param int $int
-     * @see _sha256()
+     * @see self::_sha256()
      * @return int
      */
     function _not($int)
@@ -787,7 +787,7 @@ class Hash
      *
      * @param int $...
      * @return int
-     * @see _sha256()
+     * @see self::_sha256()
      * @access private
      */
     function _add()
diff --git a/phpseclib/Crypt/RC2.php b/phpseclib/Crypt/RC2.php
index e6f920af..bfe3bca4 100644
--- a/phpseclib/Crypt/RC2.php
+++ b/phpseclib/Crypt/RC2.php
@@ -58,7 +58,7 @@ class RC2 extends Base
      * The Key
      *
      * @see \phpseclib\Crypt\Base::key
-     * @see setKey()
+     * @see self::setKey()
      * @var string
      * @access private
      */
@@ -68,9 +68,9 @@ class RC2 extends Base
      * The Original (unpadded) Key
      *
      * @see \phpseclib\Crypt\Base::key
-     * @see setKey()
-     * @see encrypt()
-     * @see decrypt()
+     * @see self::setKey()
+     * @see self::encrypt()
+     * @see self::decrypt()
      * @var string
      * @access private
      */
@@ -115,8 +115,8 @@ class RC2 extends Base
     /**
      * The key length in bits.
      *
-     * @see \phpseclib\Crypt\RC2::setKeyLength()
-     * @see \phpseclib\Crypt\RC2::setKey()
+     * @see self::setKeyLength()
+     * @see self::setKey()
      * @var int
      * @access private
      * @internal Should be in range [1..1024].
@@ -127,8 +127,8 @@ class RC2 extends Base
     /**
      * The key length in bits.
      *
-     * @see \phpseclib\Crypt\RC2::isValidEnine()
-     * @see \phpseclib\Crypt\RC2::setKey()
+     * @see self::isValidEnine()
+     * @see self::setKey()
      * @var int
      * @access private
      * @internal Should be in range [1..1024].
@@ -138,7 +138,7 @@ class RC2 extends Base
     /**
      * The Key Schedule
      *
-     * @see \phpseclib\Crypt\RC2::_setupKey()
+     * @see self::_setupKey()
      * @var array
      * @access private
      */
@@ -148,7 +148,7 @@ class RC2 extends Base
      * Key expansion randomization table.
      * Twice the same 256-value sequence to save a modulus in key expansion.
      *
-     * @see \phpseclib\Crypt\RC2::setKey()
+     * @see self::setKey()
      * @var array
      * @access private
      */
@@ -222,7 +222,7 @@ class RC2 extends Base
     /**
      * Inverse key expansion randomization table.
      *
-     * @see \phpseclib\Crypt\RC2::setKey()
+     * @see self::setKey()
      * @var array
      * @access private
      */
@@ -377,7 +377,7 @@ class RC2 extends Base
      *
      * Mostly a wrapper for \phpseclib\Crypt\Base::encrypt, with some additional OpenSSL handling code
      *
-     * @see decrypt()
+     * @see self::decrypt()
      * @access public
      * @param string $plaintext
      * @return string $ciphertext
@@ -400,7 +400,7 @@ class RC2 extends Base
      *
      * Mostly a wrapper for \phpseclib\Crypt\Base::decrypt, with some additional OpenSSL handling code
      *
-     * @see encrypt()
+     * @see self::encrypt()
      * @access public
      * @param string $ciphertext
      * @return string $plaintext
diff --git a/phpseclib/Crypt/RC4.php b/phpseclib/Crypt/RC4.php
index a5db1691..b24129d2 100644
--- a/phpseclib/Crypt/RC4.php
+++ b/phpseclib/Crypt/RC4.php
@@ -105,7 +105,7 @@ class RC4 extends Base
     /**
      * The Key
      *
-     * @see \phpseclib\Crypt\RC4::setKey()
+     * @see self::setKey()
      * @var string
      * @access private
      */
@@ -114,7 +114,7 @@ class RC4 extends Base
     /**
      * The Key Stream for decryption and encryption
      *
-     * @see \phpseclib\Crypt\RC4::setKey()
+     * @see self::setKey()
      * @var array
      * @access private
      */
@@ -182,7 +182,7 @@ class RC4 extends Base
      * {@link http://en.wikipedia.org/wiki/Related_key_attack http://en.wikipedia.org/wiki/Related_key_attack}
      *
      * @param string $iv
-     * @see \phpseclib\Crypt\RC4::setKey()
+     * @see self::setKey()
      * @access public
      */
     function setIV($iv)
@@ -214,7 +214,7 @@ class RC4 extends Base
      * Encrypts a message.
      *
      * @see \phpseclib\Crypt\Base::decrypt()
-     * @see \phpseclib\Crypt\RC4::_crypt()
+     * @see self::_crypt()
      * @access public
      * @param string $plaintext
      * @return string $ciphertext
@@ -234,7 +234,7 @@ class RC4 extends Base
      * At least if the continuous buffer is disabled.
      *
      * @see \phpseclib\Crypt\Base::encrypt()
-     * @see \phpseclib\Crypt\RC4::_crypt()
+     * @see self::_crypt()
      * @access public
      * @param string $ciphertext
      * @return string $plaintext
@@ -299,8 +299,8 @@ class RC4 extends Base
     /**
      * Encrypts or decrypts a message.
      *
-     * @see \phpseclib\Crypt\RC4::encrypt()
-     * @see \phpseclib\Crypt\RC4::decrypt()
+     * @see self::encrypt()
+     * @see self::decrypt()
      * @access private
      * @param string $text
      * @param int $mode
diff --git a/phpseclib/Crypt/RSA.php b/phpseclib/Crypt/RSA.php
index b6d7e628..57fc9539 100644
--- a/phpseclib/Crypt/RSA.php
+++ b/phpseclib/Crypt/RSA.php
@@ -71,8 +71,8 @@ class RSA
 {
     /**#@+
      * @access public
-     * @see \phpseclib\Crypt\RSA::encrypt()
-     * @see \phpseclib\Crypt\RSA::decrypt()
+     * @see self::encrypt()
+     * @see self::decrypt()
      */
     /**
      * Use {@link http://en.wikipedia.org/wiki/Optimal_Asymmetric_Encryption_Padding Optimal Asymmetric Encryption Padding}
@@ -80,8 +80,8 @@ class RSA
      *
      * Uses sha1 by default.
      *
-     * @see \phpseclib\Crypt\RSA::setHash()
-     * @see \phpseclib\Crypt\RSA::setMGFHash()
+     * @see self::setHash()
+     * @see self::setMGFHash()
      */
     const ENCRYPTION_OAEP = 1;
     /**
@@ -102,17 +102,17 @@ class RSA
 
     /**#@+
      * @access public
-     * @see \phpseclib\Crypt\RSA::sign()
-     * @see \phpseclib\Crypt\RSA::verify()
-     * @see \phpseclib\Crypt\RSA::setHash()
+     * @see self::sign()
+     * @see self::verify()
+     * @see self::setHash()
     */
     /**
      * Use the Probabilistic Signature Scheme for signing
      *
      * Uses sha1 by default.
      *
-     * @see \phpseclib\Crypt\RSA::setSaltLength()
-     * @see \phpseclib\Crypt\RSA::setMGFHash()
+     * @see self::setSaltLength()
+     * @see self::setMGFHash()
      */
     const SIGNATURE_PSS = 1;
     /**
@@ -415,7 +415,7 @@ class RSA
      * For use with parsing XML formatted keys.  PHP's XML Parser functions use utilized - instead of PHP's DOM functions -
      * because PHP's XML Parser functions work on PHP4 whereas PHP's DOM functions - although surperior - don't.
      *
-     * @see \phpseclib\Crypt\RSA::_start_element_handler()
+     * @see self::_start_element_handler()
      * @var array
      * @access private
      */
@@ -426,8 +426,8 @@ class RSA
      *
      * For use with parsing XML formatted keys.
      *
-     * @see \phpseclib\Crypt\RSA::_character_handler()
-     * @see \phpseclib\Crypt\RSA::_stop_element_handler()
+     * @see self::_character_handler()
+     * @see self::_stop_element_handler()
      * @var mixed
      * @access private
      */
@@ -437,7 +437,7 @@ class RSA
      * OpenSSL configuration file name.
      *
      * Set to null to use system configuration file.
-     * @see \phpseclib\Crypt\RSA::createKey()
+     * @see self::createKey()
      * @var mixed
      * @Access public
      */
@@ -713,7 +713,7 @@ class RSA
      * Convert a private key to the appropriate format.
      *
      * @access private
-     * @see setPrivateKeyFormat()
+     * @see self::setPrivateKeyFormat()
      * @param string $RSAPrivateKey
      * @return string
      */
@@ -942,7 +942,7 @@ class RSA
      * Convert a public key to the appropriate format
      *
      * @access private
-     * @see setPublicKeyFormat()
+     * @see self::setPublicKeyFormat()
      * @param string $RSAPrivateKey
      * @return string
      */
@@ -1020,8 +1020,8 @@ class RSA
      * Break a public or private key down into its constituant components
      *
      * @access private
-     * @see _convertPublicKey()
-     * @see _convertPrivateKey()
+     * @see self::_convertPublicKey()
+     * @see self::_convertPrivateKey()
      * @param string $key
      * @param int $type
      * @return array
@@ -1621,8 +1621,8 @@ class RSA
      * Private keys can be encrypted with a password.  To unset the password, pass in the empty string or false.
      * Or rather, pass in $password such that empty($password) && !is_string($password) is true.
      *
-     * @see createKey()
-     * @see loadKey()
+     * @see self::createKey()
+     * @see self::loadKey()
      * @access public
      * @param string $password
      */
@@ -1646,7 +1646,7 @@ class RSA
      *
      * Returns true on success, false on failure
      *
-     * @see getPublicKey()
+     * @see self::getPublicKey()
      * @access public
      * @param string $key optional
      * @param int $type optional
@@ -1706,7 +1706,7 @@ class RSA
      *
      * Returns true on success, false on failure
      *
-     * @see getPublicKey()
+     * @see self::getPublicKey()
      * @access public
      * @param string $key optional
      * @param int $type optional
@@ -1737,7 +1737,7 @@ class RSA
      * or if the public key was set via setPublicKey().  If the currently loaded key is supposed to be the public key this
      * function won't return it since this library, for the most part, doesn't distinguish between public and private keys.
      *
-     * @see getPublicKey()
+     * @see self::getPublicKey()
      * @access public
      * @param string $key
      * @param int $type optional
@@ -1765,6 +1765,7 @@ class RSA
      * @access public
      * @param string $algorithm The hashing algorithm to be used. Valid options are 'md5' and 'sha256'. False is returned
      * for invalid values.
+     * @return mixed
      */
     public function getPublicKeyFingerprint($algorithm = 'md5')
     {
@@ -1794,10 +1795,11 @@ class RSA
      *
      * The private key is only returned if the currently loaded key contains the constituent prime numbers.
      *
-     * @see getPublicKey()
+     * @see self::getPublicKey()
      * @access public
      * @param string $key
      * @param int $type optional
+     * @return mixed
      */
     function getPrivateKey($type = self::PUBLIC_FORMAT_PKCS1)
     {
@@ -1818,7 +1820,7 @@ class RSA
      * Returns the private key without the prime number constituants.  Structurally identical to a public key that
      * hasn't been set as the public key
      *
-     * @see getPrivateKey()
+     * @see self::getPrivateKey()
      * @access private
      * @param string $key
      * @param int $type optional
@@ -1840,6 +1842,7 @@ class RSA
      *  __toString() magic method
      *
      * @access public
+     * @return string
      */
     function __toString()
     {
@@ -1855,6 +1858,7 @@ class RSA
      *  __clone() magic method
      *
      * @access public
+     * @return Crypt_RSA
      */
     function __clone()
     {
@@ -1950,7 +1954,7 @@ class RSA
     /**
      * Determines the private key format
      *
-     * @see createKey()
+     * @see self::createKey()
      * @access public
      * @param int $format
      */
@@ -1962,7 +1966,7 @@ class RSA
     /**
      * Determines the public key format
      *
-     * @see createKey()
+     * @see self::createKey()
      * @access public
      * @param int $format
      */
@@ -2879,7 +2883,7 @@ class RSA
      * If $plaintext exceeds those limits it will be broken up so that it does and the resultant ciphertext's will
      * be concatenated together.
      *
-     * @see decrypt()
+     * @see self::decrypt()
      * @access public
      * @param string $plaintext
      * @return string
@@ -2925,7 +2929,7 @@ class RSA
     /**
      * Decryption
      *
-     * @see encrypt()
+     * @see self::encrypt()
      * @access public
      * @param string $plaintext
      * @return string
@@ -2967,7 +2971,7 @@ class RSA
     /**
      * Create a signature
      *
-     * @see verify()
+     * @see self::verify()
      * @access public
      * @param string $message
      * @return string
@@ -2990,7 +2994,7 @@ class RSA
     /**
      * Verifies a signature
      *
-     * @see sign()
+     * @see self::sign()
      * @access public
      * @param string $message
      * @param string $signature
diff --git a/phpseclib/Crypt/Rijndael.php b/phpseclib/Crypt/Rijndael.php
index 334eaf9d..e9723932 100644
--- a/phpseclib/Crypt/Rijndael.php
+++ b/phpseclib/Crypt/Rijndael.php
@@ -7,11 +7,11 @@
  *
  * PHP version 5
  *
- * If {@link \phpseclib\Crypt\Rijndael::setBlockLength() setBlockLength()} isn't called, it'll be assumed to be 128 bits.  If
- * {@link \phpseclib\Crypt\Rijndael::setKeyLength() setKeyLength()} isn't called, it'll be calculated from
- * {@link \phpseclib\Crypt\Rijndael::setKey() setKey()}.  ie. if the key is 128-bits, the key length will be 128-bits.  If it's
+ * If {@link self::setBlockLength() setBlockLength()} isn't called, it'll be assumed to be 128 bits.  If
+ * {@link self::setKeyLength() setKeyLength()} isn't called, it'll be calculated from
+ * {@link self::setKey() setKey()}.  ie. if the key is 128-bits, the key length will be 128-bits.  If it's
  * 136-bits it'll be null-padded to 192-bits and 192 bits will be the key length until
- * {@link \phpseclib\Crypt\Rijndael::setKey() setKey()} is called, again, at which point, it'll be recalculated.
+ * {@link self::setKey() setKey()} is called, again, at which point, it'll be recalculated.
  *
  * Not all Rijndael implementations may support 160-bits or 224-bits as the block length / key length.  mcrypt, for example,
  * does not.  AES, itself, only supports block lengths of 128 and key lengths of 128, 192, and 256.
@@ -75,7 +75,7 @@ class Rijndael extends Base
      *
      * @see \phpseclib\Crypt\Base::cipher_name_mcrypt
      * @see \phpseclib\Crypt\Base::engine
-     * @see isValidEngine()
+     * @see self::isValidEngine()
      * @var string
      * @access private
      */
@@ -94,7 +94,7 @@ class Rijndael extends Base
     /**
      * The Key Schedule
      *
-     * @see _setup()
+     * @see self::_setup()
      * @var array
      * @access private
      */
@@ -103,7 +103,7 @@ class Rijndael extends Base
     /**
      * The Inverse Key Schedule
      *
-     * @see _setup()
+     * @see self::_setup()
      * @var array
      * @access private
      */
@@ -112,7 +112,7 @@ class Rijndael extends Base
     /**
      * The Block Length divided by 32
      *
-     * @see setBlockLength()
+     * @see self::setBlockLength()
      * @var int
      * @access private
      * @internal The max value is 256 / 32 = 8, the min value is 128 / 32 = 4.  Exists in conjunction with $block_size
@@ -125,7 +125,7 @@ class Rijndael extends Base
     /**
      * The Key Length (in bytes)
      *
-     * @see setKeyLength()
+     * @see self::setKeyLength()
      * @var int
      * @access private
      * @internal The max value is 256 / 8 = 32, the min value is 128 / 8 = 16.  Exists in conjunction with $Nk
@@ -138,7 +138,7 @@ class Rijndael extends Base
     /**
      * The Key Length divided by 32
      *
-     * @see setKeyLength()
+     * @see self::setKeyLength()
      * @var int
      * @access private
      * @internal The max value is 256 / 32 = 8, the min value is 128 / 32 = 4
@@ -592,9 +592,9 @@ class Rijndael extends Base
     /**
      * Provides the mixColumns and sboxes tables
      *
-     * @see \phpseclib\Crypt\Rijndael:_encryptBlock()
-     * @see \phpseclib\Crypt\Rijndael:_setupInlineCrypt()
-     * @see \phpseclib\Crypt\Rijndael:_subWord()
+     * @see self::_encryptBlock()
+     * @see self::_setupInlineCrypt()
+     * @see self::_subWord()
      * @access private
      * @return array &$tables
      */
@@ -681,9 +681,9 @@ class Rijndael extends Base
     /**
      * Provides the inverse mixColumns and inverse sboxes tables
      *
-     * @see \phpseclib\Crypt\Rijndael:_decryptBlock()
-     * @see \phpseclib\Crypt\Rijndael:_setupInlineCrypt()
-     * @see \phpseclib\Crypt\Rijndael:_setupKey()
+     * @see self::_decryptBlock()
+     * @see self::_setupInlineCrypt()
+     * @see self::_setupKey()
      * @access private
      * @return array &$tables
      */
diff --git a/phpseclib/Crypt/TripleDES.php b/phpseclib/Crypt/TripleDES.php
index c5a0229e..91c5bc62 100644
--- a/phpseclib/Crypt/TripleDES.php
+++ b/phpseclib/Crypt/TripleDES.php
@@ -48,7 +48,6 @@ use phpseclib\Crypt\DES;
  */
 class TripleDES extends DES
 {
-
     /**
      * Encrypt / decrypt using inner chaining
      *
@@ -104,7 +103,7 @@ class TripleDES extends DES
     /**
      * max possible size of $key
      *
-     * @see \phpseclib\Crypt\TripleDES::setKey()
+     * @see self::setKey()
      * @see \phpseclib\Crypt\DES::setKey()
      * @var string
      * @access private
@@ -375,7 +374,7 @@ class TripleDES extends DES
      * however, they are also less intuitive and more likely to cause you problems.
      *
      * @see \phpseclib\Crypt\Base::enableContinuousBuffer()
-     * @see \phpseclib\Crypt\TripleDES::disableContinuousBuffer()
+     * @see self::disableContinuousBuffer()
      * @access public
      */
     function enableContinuousBuffer()
@@ -394,7 +393,7 @@ class TripleDES extends DES
      * The default behavior.
      *
      * @see \phpseclib\Crypt\Base::disableContinuousBuffer()
-     * @see \phpseclib\Crypt\TripleDES::enableContinuousBuffer()
+     * @see self::enableContinuousBuffer()
      * @access public
      */
     function disableContinuousBuffer()
diff --git a/phpseclib/File/ASN1.php b/phpseclib/File/ASN1.php
index b71469b4..59e403a8 100644
--- a/phpseclib/File/ASN1.php
+++ b/phpseclib/File/ASN1.php
@@ -124,8 +124,8 @@ class ASN1
      *
      * @var array
      * @access private
-     * @see \phpseclib\File\ASN1::setTimeFormat()
-     * @see \phpseclib\File\ASN1::asn1map()
+     * @see self::setTimeFormat()
+     * @see self::asn1map()
      * @link http://php.net/class.datetime
      */
     var $encoded;
@@ -137,7 +137,7 @@ class ASN1
      *
      * @var array
      * @access private
-     * @see \phpseclib\File\ASN1::_encode_der()
+     * @see self::_encode_der()
      */
     var $filters;
 
diff --git a/phpseclib/Math/BigInteger.php b/phpseclib/Math/BigInteger.php
index b8fbad2b..8ea9f1b2 100644
--- a/phpseclib/Math/BigInteger.php
+++ b/phpseclib/Math/BigInteger.php
@@ -199,17 +199,10 @@ class BigInteger
      */
     var $is_negative = false;
 
-    /**
-     * Random number generator function
-     *
-     * @access private
-     */
-    var $generator = 'mt_rand';
-
     /**
      * Precision
      *
-     * @see setPrecision()
+     * @see self::setPrecision()
      * @access private
      */
     var $precision = -1;
@@ -217,7 +210,7 @@ class BigInteger
     /**
      * Precision Bitmask
      *
-     * @see setPrecision()
+     * @see self::setPrecision()
      * @access private
      */
     var $bitmask = false;
@@ -229,8 +222,8 @@ class BigInteger
      * a variable that'll be serializable regardless of whether or not extensions are being used.  Unlike $this->value,
      * however, $this->hex is only calculated when $this->__sleep() is called.
      *
-     * @see __sleep()
-     * @see __wakeup()
+     * @see self::__sleep()
+     * @see self::__wakeup()
      * @var string
      * @access private
      */
@@ -729,7 +722,7 @@ class BigInteger
      * {@link http://php.net/language.oop5.basic#51624}
      *
      * @access public
-     * @see __clone()
+     * @see self::__clone()
      * @return \phpseclib\Math\BigInteger
      */
     function copy()
@@ -737,7 +730,6 @@ class BigInteger
         $temp = new static();
         $temp->value = $this->value;
         $temp->is_negative = $this->is_negative;
-        $temp->generator = $this->generator;
         $temp->precision = $this->precision;
         $temp->bitmask = $this->bitmask;
         return $temp;
@@ -766,7 +758,7 @@ class BigInteger
      * PHP5, call BigInteger::copy(), instead.
      *
      * @access public
-     * @see copy()
+     * @see self::copy()
      * @return \phpseclib\Math\BigInteger
      */
     function __clone()
@@ -779,16 +771,13 @@ class BigInteger
      *
      * Will be called, automatically, when serialize() is called on a BigInteger object.
      *
-     * @see __wakeup()
+     * @see self::__wakeup()
      * @access public
      */
     function __sleep()
     {
         $this->hex = $this->toHex(true);
         $vars = array('hex');
-        if ($this->generator != 'mt_rand') {
-            $vars[] = 'generator';
-        }
         if ($this->precision > 0) {
             $vars[] = 'precision';
         }
@@ -800,7 +789,7 @@ class BigInteger
      *
      * Will be called, automatically, when unserialize() is called on a BigInteger object.
      *
-     * @see __sleep()
+     * @see self::__sleep()
      * @access public
      */
     function __wakeup()
@@ -1856,7 +1845,7 @@ class BigInteger
      *
      * For most $modes this will return the remainder.
      *
-     * @see _slidingWindow()
+     * @see self::_slidingWindow()
      * @access private
      * @param array $x
      * @param array $n
@@ -1893,7 +1882,7 @@ class BigInteger
     /**
      * Modular reduction preperation
      *
-     * @see _slidingWindow()
+     * @see self::_slidingWindow()
      * @access private
      * @param array $x
      * @param array $n
@@ -1911,7 +1900,7 @@ class BigInteger
     /**
      * Modular multiply
      *
-     * @see _slidingWindow()
+     * @see self::_slidingWindow()
      * @access private
      * @param array $x
      * @param array $y
@@ -1931,7 +1920,7 @@ class BigInteger
     /**
      * Modular square
      *
-     * @see _slidingWindow()
+     * @see self::_slidingWindow()
      * @access private
      * @param array $x
      * @param array $n
@@ -1952,7 +1941,7 @@ class BigInteger
      * Calculates $x%$n, where $n = 2**$e, for some $e.  Since this is basically the same as doing $x & ($n-1),
      * we'll just use this function as a wrapper for doing that.
      *
-     * @see _slidingWindow()
+     * @see self::_slidingWindow()
      * @access private
      * @param \phpseclib\Math\BigInteger
      * @return \phpseclib\Math\BigInteger
@@ -1982,7 +1971,7 @@ class BigInteger
      * (x >> 1) + (x >> 1) != x / 2 + x / 2.  If x is even, they're the same, but if x is odd, they're not.  See the in-line
      * comments for details.
      *
-     * @see _slidingWindow()
+     * @see self::_slidingWindow()
      * @access private
      * @param array $n
      * @param array $m
@@ -2079,7 +2068,7 @@ class BigInteger
      * For numbers with more than four digits BigInteger::_barrett() is faster.  The difference between that and this
      * is that this function does not fold the denominator into a smaller form.
      *
-     * @see _slidingWindow()
+     * @see self::_slidingWindow()
      * @access private
      * @param array $x
      * @param array $n
@@ -2150,7 +2139,7 @@ class BigInteger
      *
      * If you're going to be doing array_slice($product->value, 0, $stop), some cycles can be saved.
      *
-     * @see _regularBarrett()
+     * @see self::_regularBarrett()
      * @param array $x_value
      * @param bool $x_negative
      * @param array $y_value
@@ -2231,8 +2220,8 @@ class BigInteger
      * improved upon (basically, by using the comba method).  gcd($n, 2) must be equal to one for this function
      * to work correctly.
      *
-     * @see _prepMontgomery()
-     * @see _slidingWindow()
+     * @see self::_prepMontgomery()
+     * @see self::_slidingWindow()
      * @access private
      * @param array $x
      * @param array $n
@@ -2278,8 +2267,8 @@ class BigInteger
      * Interleaves the montgomery reduction and long multiplication algorithms together as described in
      * {@link http://www.cacr.math.uwaterloo.ca/hac/about/chap14.pdf#page=13 HAC 14.36}
      *
-     * @see _prepMontgomery()
-     * @see _montgomery()
+     * @see self::_prepMontgomery()
+     * @see self::_montgomery()
      * @access private
      * @param array $x
      * @param array $y
@@ -2330,8 +2319,8 @@ class BigInteger
     /**
      * Prepare a number for use in Montgomery Modular Reductions
      *
-     * @see _montgomery()
-     * @see _slidingWindow()
+     * @see self::_montgomery()
+     * @see self::_slidingWindow()
      * @access private
      * @param array $x
      * @param array $n
@@ -2369,7 +2358,7 @@ class BigInteger
      *
      * Thanks to Pedro Gimeno Fortea for input!
      *
-     * @see _montgomery()
+     * @see self::_montgomery()
      * @access private
      * @param array $x
      * @return int
@@ -2650,7 +2639,7 @@ class BigInteger
      * @param \phpseclib\Math\BigInteger $y
      * @return int < 0 if $this is less than $y; > 0 if $this is greater than $y, and 0 if they are equal.
      * @access public
-     * @see equals()
+     * @see self::equals()
      * @internal Could return $this->subtract($x), but that's not as fast as what we do do.
      */
     function compare($y)
@@ -2673,7 +2662,7 @@ class BigInteger
      * @param array $y_value
      * @param bool $y_negative
      * @return int
-     * @see compare()
+     * @see self::compare()
      * @access private
      */
     function _compare($x_value, $x_negative, $y_value, $y_negative)
@@ -2709,7 +2698,7 @@ class BigInteger
      * @param \phpseclib\Math\BigInteger $x
      * @return bool
      * @access public
-     * @see compare()
+     * @see self::compare()
      */
     function equals($x)
     {
@@ -3259,7 +3248,7 @@ class BigInteger
      *
      * If the current number is odd it'll be unchanged.  If it's even, one will be added to it.
      *
-     * @see randomPrime()
+     * @see self::randomPrime()
      * @access private
      */
     function _make_odd()
@@ -3509,7 +3498,7 @@ class BigInteger
      *
      * @param \phpseclib\Math\BigInteger
      * @return \phpseclib\Math\BigInteger
-     * @see _trim()
+     * @see self::_trim()
      * @access private
      */
     function _normalize($result)
@@ -3689,7 +3678,7 @@ class BigInteger
      *
      * The ability to DER-encode integers is needed to create RSA public keys for use with OpenSSL
      *
-     * @see modPow()
+     * @see self::modPow()
      * @access private
      * @param int $length
      * @return string
diff --git a/phpseclib/Net/SFTP.php b/phpseclib/Net/SFTP.php
index 1013b4e8..fe937706 100644
--- a/phpseclib/Net/SFTP.php
+++ b/phpseclib/Net/SFTP.php
@@ -90,7 +90,7 @@ class SFTP extends SSH2
     /**
      * Packet Types
      *
-     * @see \phpseclib\Net\SFTP::__construct()
+     * @see self::__construct()
      * @var array
      * @access private
      */
@@ -99,7 +99,7 @@ class SFTP extends SSH2
     /**
      * Status Codes
      *
-     * @see \phpseclib\Net\SFTP::__construct()
+     * @see self::__construct()
      * @var array
      * @access private
      */
@@ -112,7 +112,7 @@ class SFTP extends SSH2
      * concurrent actions, so it's somewhat academic, here.
      *
      * @var int
-     * @see \phpseclib\Net\SFTP::_send_sftp_packet()
+     * @see self::_send_sftp_packet()
      * @access private
      */
     var $request_id = false;
@@ -124,7 +124,7 @@ class SFTP extends SSH2
      * concurrent actions, so it's somewhat academic, here.
      *
      * @var int
-     * @see \phpseclib\Net\SFTP::_get_sftp_packet()
+     * @see self::_get_sftp_packet()
      * @access private
      */
     var $packet_type = -1;
@@ -133,7 +133,7 @@ class SFTP extends SSH2
      * Packet Buffer
      *
      * @var string
-     * @see \phpseclib\Net\SFTP::_get_sftp_packet()
+     * @see self::_get_sftp_packet()
      * @access private
      */
     var $packet_buffer = '';
@@ -142,7 +142,7 @@ class SFTP extends SSH2
      * Extensions supported by the server
      *
      * @var array
-     * @see \phpseclib\Net\SFTP::_initChannel()
+     * @see self::_initChannel()
      * @access private
      */
     var $extensions = array();
@@ -151,7 +151,7 @@ class SFTP extends SSH2
      * Server SFTP version
      *
      * @var int
-     * @see \phpseclib\Net\SFTP::_initChannel()
+     * @see self::_initChannel()
      * @access private
      */
     var $version;
@@ -160,8 +160,8 @@ class SFTP extends SSH2
      * Current working directory
      *
      * @var string
-     * @see \phpseclib\Net\SFTP::_realpath()
-     * @see \phpseclib\Net\SFTP::chdir()
+     * @see self::_realpath()
+     * @see self::chdir()
      * @access private
      */
     var $pwd = false;
@@ -169,7 +169,7 @@ class SFTP extends SSH2
     /**
      * Packet Type Log
      *
-     * @see \phpseclib\Net\SFTP::getLog()
+     * @see self::getLog()
      * @var array
      * @access private
      */
@@ -178,7 +178,7 @@ class SFTP extends SSH2
     /**
      * Packet Log
      *
-     * @see \phpseclib\Net\SFTP::getLog()
+     * @see self::getLog()
      * @var array
      * @access private
      */
@@ -187,8 +187,8 @@ class SFTP extends SSH2
     /**
      * Error information
      *
-     * @see \phpseclib\Net\SFTP::getSFTPErrors()
-     * @see \phpseclib\Net\SFTP::getLastSFTPError()
+     * @see self::getSFTPErrors()
+     * @see self::getLastSFTPError()
      * @var string
      * @access private
      */
@@ -200,9 +200,9 @@ class SFTP extends SSH2
      * Rather than always having to open a directory and close it immediately there after to see if a file is a directory
      * we'll cache the results.
      *
-     * @see \phpseclib\Net\SFTP::_update_stat_cache()
-     * @see \phpseclib\Net\SFTP::_remove_from_stat_cache()
-     * @see \phpseclib\Net\SFTP::_query_stat_cache()
+     * @see self::_update_stat_cache()
+     * @see self::_remove_from_stat_cache()
+     * @see self::_query_stat_cache()
      * @var array
      * @access private
      */
@@ -211,8 +211,8 @@ class SFTP extends SSH2
     /**
      * Max SFTP Packet Size
      *
-     * @see \phpseclib\Net\SFTP::__construct()
-     * @see \phpseclib\Net\SFTP::get()
+     * @see self::__construct()
+     * @see self::get()
      * @var array
      * @access private
      */
@@ -221,8 +221,8 @@ class SFTP extends SSH2
     /**
      * Stat Cache Flag
      *
-     * @see \phpseclib\Net\SFTP::disableStatCache()
-     * @see \phpseclib\Net\SFTP::enableStatCache()
+     * @see self::disableStatCache()
+     * @see self::enableStatCache()
      * @var bool
      * @access private
      */
@@ -231,8 +231,8 @@ class SFTP extends SSH2
     /**
      * Sort Options
      *
-     * @see \phpseclib\Net\SFTP::_comparator()
-     * @see \phpseclib\Net\SFTP::setListOrder()
+     * @see self::_comparator()
+     * @see self::setListOrder()
      * @var array
      * @access private
      */
@@ -608,7 +608,7 @@ class SFTP extends SSH2
      * SFTP doesn't provide a mechanism by which the current working directory can be changed, so we'll emulate it.  Returns
      * the absolute (canonicalized) path.
      *
-     * @see \phpseclib\Net\SFTP::chdir()
+     * @see self::chdir()
      * @param string $path
      * @return mixed
      * @access private
@@ -2658,8 +2658,8 @@ class SFTP extends SSH2
      *
      * @param int $type
      * @param string $data
-     * @see \phpseclib\Net\SFTP::_get_sftp_packet()
-     * @see \phpseclib\Net\SSH2::_send_channel_packet()
+     * @see self::_get_sftp_packet()
+     * @see self::_send_channel_packet()
      * @return bool
      * @access private
      */
@@ -2700,7 +2700,7 @@ class SFTP extends SSH2
      * There can be one SSH_MSG_CHANNEL_DATA messages containing two SFTP packets or there can be two SSH_MSG_CHANNEL_DATA
      * messages containing one SFTP packet.
      *
-     * @see \phpseclib\Net\SFTP::_send_sftp_packet()
+     * @see self::_send_sftp_packet()
      * @return string
      * @access private
      */
diff --git a/phpseclib/Net/SSH1.php b/phpseclib/Net/SSH1.php
index 3ddb47b6..cc108a94 100644
--- a/phpseclib/Net/SSH1.php
+++ b/phpseclib/Net/SSH1.php
@@ -261,7 +261,7 @@ class SSH1
      *
      * Logged for debug purposes
      *
-     * @see \phpseclib\Net\SSH1::getServerKeyPublicExponent()
+     * @see self::getServerKeyPublicExponent()
      * @var string
      * @access private
      */
@@ -272,7 +272,7 @@ class SSH1
      *
      * Logged for debug purposes
      *
-     * @see \phpseclib\Net\SSH1::getServerKeyPublicModulus()
+     * @see self::getServerKeyPublicModulus()
      * @var string
      * @access private
      */
@@ -283,7 +283,7 @@ class SSH1
      *
      * Logged for debug purposes
      *
-     * @see \phpseclib\Net\SSH1::getHostKeyPublicExponent()
+     * @see self::getHostKeyPublicExponent()
      * @var string
      * @access private
      */
@@ -294,7 +294,7 @@ class SSH1
      *
      * Logged for debug purposes
      *
-     * @see \phpseclib\Net\SSH1::getHostKeyPublicModulus()
+     * @see self::getHostKeyPublicModulus()
      * @var string
      * @access private
      */
@@ -305,7 +305,7 @@ class SSH1
      *
      * Logged for debug purposes
      *
-     * @see \phpseclib\Net\SSH1::getSupportedCiphers()
+     * @see self::getSupportedCiphers()
      * @var array
      * @access private
      */
@@ -324,7 +324,7 @@ class SSH1
      *
      * Logged for debug purposes
      *
-     * @see \phpseclib\Net\SSH1::getSupportedAuthentications()
+     * @see self::getSupportedAuthentications()
      * @var array
      * @access private
      */
@@ -338,7 +338,7 @@ class SSH1
     /**
      * Server Identification
      *
-     * @see \phpseclib\Net\SSH1::getServerIdentification()
+     * @see self::getServerIdentification()
      * @var string
      * @access private
      */
@@ -347,7 +347,7 @@ class SSH1
     /**
      * Protocol Flags
      *
-     * @see \phpseclib\Net\SSH1::__construct()
+     * @see self::__construct()
      * @var array
      * @access private
      */
@@ -356,7 +356,7 @@ class SSH1
     /**
      * Protocol Flag Log
      *
-     * @see \phpseclib\Net\SSH1::getLog()
+     * @see self::getLog()
      * @var array
      * @access private
      */
@@ -365,7 +365,7 @@ class SSH1
     /**
      * Message Log
      *
-     * @see \phpseclib\Net\SSH1::getLog()
+     * @see self::getLog()
      * @var array
      * @access private
      */
@@ -374,7 +374,7 @@ class SSH1
     /**
      * Real-time log file pointer
      *
-     * @see \phpseclib\Net\SSH1::_append_log()
+     * @see self::_append_log()
      * @var resource
      * @access private
      */
@@ -383,7 +383,7 @@ class SSH1
     /**
      * Real-time log file size
      *
-     * @see \phpseclib\Net\SSH1::_append_log()
+     * @see self::_append_log()
      * @var int
      * @access private
      */
@@ -392,7 +392,7 @@ class SSH1
     /**
      * Real-time log file wrap boolean
      *
-     * @see \phpseclib\Net\SSH1::_append_log()
+     * @see self::_append_log()
      * @var bool
      * @access private
      */
@@ -401,7 +401,7 @@ class SSH1
     /**
      * Interactive Buffer
      *
-     * @see \phpseclib\Net\SSH1::read()
+     * @see self::read()
      * @var array
      * @access private
      */
@@ -410,7 +410,7 @@ class SSH1
     /**
      * Timeout
      *
-     * @see \phpseclib\Net\SSH1::setTimeout()
+     * @see self::setTimeout()
      * @access private
      */
     var $timeout;
@@ -418,7 +418,7 @@ class SSH1
     /**
      * Current Timeout
      *
-     * @see \phpseclib\Net\SSH1::_get_channel_packet()
+     * @see self::_get_channel_packet()
      * @access private
      */
     var $curTimeout;
@@ -426,7 +426,7 @@ class SSH1
     /**
      * Log Boundary
      *
-     * @see \phpseclib\Net\SSH1::_format_log
+     * @see self::_format_log()
      * @access private
      */
     var $log_boundary = ':';
@@ -434,7 +434,7 @@ class SSH1
     /**
      * Log Long Width
      *
-     * @see \phpseclib\Net\SSH1::_format_log
+     * @see self::_format_log()
      * @access private
      */
     var $log_long_width = 65;
@@ -442,7 +442,7 @@ class SSH1
     /**
      * Log Short Width
      *
-     * @see \phpseclib\Net\SSH1::_format_log
+     * @see self::_format_log()
      * @access private
      */
     var $log_short_width = 16;
@@ -450,8 +450,8 @@ class SSH1
     /**
      * Hostname
      *
-     * @see \phpseclib\Net\SSH1::__construct()
-     * @see \phpseclib\Net\SSH1::_connect()
+     * @see self::__construct()
+     * @see self::_connect()
      * @var string
      * @access private
      */
@@ -460,8 +460,8 @@ class SSH1
     /**
      * Port Number
      *
-     * @see \phpseclib\Net\SSH1::__construct()
-     * @see \phpseclib\Net\SSH1::_connect()
+     * @see self::__construct()
+     * @see self::_connect()
      * @var int
      * @access private
      */
@@ -475,8 +475,8 @@ class SSH1
      * however, is non-optional. There will be a timeout, whether or not you set it. If you don't it'll be
      * 10 seconds. It is used by fsockopen() in that function.
      *
-     * @see \phpseclib\Net\SSH1::__construct()
-     * @see \phpseclib\Net\SSH1::_connect()
+     * @see self::__construct()
+     * @see self::_connect()
      * @var int
      * @access private
      */
@@ -485,8 +485,8 @@ class SSH1
     /**
      * Default cipher
      *
-     * @see \phpseclib\Net\SSH1::__construct()
-     * @see \phpseclib\Net\SSH1::_connect()
+     * @see self::__construct()
+     * @see self::_connect()
      * @var int
      * @access private
      */
@@ -788,8 +788,8 @@ class SSH1
      *
      * Returns false on failure and the output, otherwise.
      *
-     * @see \phpseclib\Net\SSH1::interactiveRead()
-     * @see \phpseclib\Net\SSH1::interactiveWrite()
+     * @see self::interactiveRead()
+     * @see self::interactiveWrite()
      * @param string $cmd
      * @return mixed
      * @access public
@@ -838,8 +838,8 @@ class SSH1
     /**
      * Creates an interactive shell
      *
-     * @see \phpseclib\Net\SSH1::interactiveRead()
-     * @see \phpseclib\Net\SSH1::interactiveWrite()
+     * @see self::interactiveRead()
+     * @see self::interactiveWrite()
      * @return bool
      * @access private
      */
@@ -882,7 +882,7 @@ class SSH1
     /**
      * Inputs a command into an interactive shell.
      *
-     * @see \phpseclib\Net\SSH1::interactiveWrite()
+     * @see self::interactiveWrite()
      * @param string $cmd
      * @return bool
      * @access public
@@ -898,7 +898,7 @@ class SSH1
      * $expect can take the form of a string literal or, if $mode == self::READ__REGEX,
      * a regular expression.
      *
-     * @see \phpseclib\Net\SSH1::write()
+     * @see self::write()
      * @param string $expect
      * @param int $mode
      * @return bool
@@ -938,7 +938,7 @@ class SSH1
     /**
      * Inputs a command into an interactive shell.
      *
-     * @see \phpseclib\Net\SSH1::interactiveRead()
+     * @see self::interactiveRead()
      * @param string $cmd
      * @return bool
      * @access public
@@ -974,7 +974,7 @@ class SSH1
      * does not support ANSI escape sequences in Win32 Console applications", so if you're a Windows user,
      * there's not going to be much recourse.
      *
-     * @see \phpseclib\Net\SSH1::interactiveRead()
+     * @see self::interactiveRead()
      * @return string
      * @access public
      */
@@ -1063,7 +1063,7 @@ class SSH1
      * Also, this function could be improved upon by adding detection for the following exploit:
      * http://www.securiteam.com/securitynews/5LP042K3FY.html
      *
-     * @see \phpseclib\Net\SSH1::_send_binary_packet()
+     * @see self::_send_binary_packet()
      * @return array
      * @access private
      */
@@ -1139,7 +1139,7 @@ class SSH1
      *
      * Returns true on success, false on failure.
      *
-     * @see \phpseclib\Net\SSH1::_get_binary_packet()
+     * @see self::_get_binary_packet()
      * @param string $data
      * @return bool
      * @access private
@@ -1186,8 +1186,8 @@ class SSH1
      * we've reimplemented it. A more detailed discussion of the differences can be found after
      * $crc_lookup_table's initialization.
      *
-     * @see \phpseclib\Net\SSH1::_get_binary_packet()
-     * @see \phpseclib\Net\SSH1::_send_binary_packet()
+     * @see self::_get_binary_packet()
+     * @see self::_send_binary_packet()
      * @param string $data
      * @return int
      * @access private
@@ -1303,7 +1303,7 @@ class SSH1
      * should be a number with the property that gcd($e, ($p - 1) * ($q - 1)) == 1.  Could just make anything that
      * calls this call modexp, instead, but I think this makes things clearer, maybe...
      *
-     * @see \phpseclib\Net\SSH1::__construct()
+     * @see self::__construct()
      * @param BigInteger $m
      * @param array $key
      * @return BigInteger
diff --git a/phpseclib/Net/SSH2.php b/phpseclib/Net/SSH2.php
index b8219fab..a59b4000 100644
--- a/phpseclib/Net/SSH2.php
+++ b/phpseclib/Net/SSH2.php
@@ -176,8 +176,8 @@ class SSH2
     /**
      * Error information
      *
-     * @see \phpseclib\Net\SSH2::getErrors()
-     * @see \phpseclib\Net\SSH2::getLastError()
+     * @see self::getErrors()
+     * @see self::getLastError()
      * @var string
      * @access private
      */
@@ -186,7 +186,7 @@ class SSH2
     /**
      * Server Identifier
      *
-     * @see \phpseclib\Net\SSH2::getServerIdentification()
+     * @see self::getServerIdentification()
      * @var array|false
      * @access private
      */
@@ -195,7 +195,7 @@ class SSH2
     /**
      * Key Exchange Algorithms
      *
-     * @see \phpseclib\Net\SSH2::getKexAlgorithims()
+     * @see self::getKexAlgorithims()
      * @var array|false
      * @access private
      */
@@ -204,7 +204,7 @@ class SSH2
     /**
      * Minimum Diffie-Hellman Group Bit Size in RFC 4419 Key Exchange Methods
      *
-     * @see Net_SSH2::_key_exchange()
+     * @see self::_key_exchange()
      * @var int
      * @access private
      */
@@ -213,7 +213,7 @@ class SSH2
     /**
      * Preferred Diffie-Hellman Group Bit Size in RFC 4419 Key Exchange Methods
      *
-     * @see Net_SSH2::_key_exchange()
+     * @see self::_key_exchange()
      * @var int
      * @access private
      */
@@ -222,7 +222,7 @@ class SSH2
     /**
      * Maximum Diffie-Hellman Group Bit Size in RFC 4419 Key Exchange Methods
      *
-     * @see Net_SSH2::_key_exchange()
+     * @see self::_key_exchange()
      * @var int
      * @access private
      */
@@ -231,7 +231,7 @@ class SSH2
     /**
      * Server Host Key Algorithms
      *
-     * @see \phpseclib\Net\SSH2::getServerHostKeyAlgorithms()
+     * @see self::getServerHostKeyAlgorithms()
      * @var array|false
      * @access private
      */
@@ -240,7 +240,7 @@ class SSH2
     /**
      * Encryption Algorithms: Client to Server
      *
-     * @see \phpseclib\Net\SSH2::getEncryptionAlgorithmsClient2Server()
+     * @see self::getEncryptionAlgorithmsClient2Server()
      * @var array|false
      * @access private
      */
@@ -249,7 +249,7 @@ class SSH2
     /**
      * Encryption Algorithms: Server to Client
      *
-     * @see \phpseclib\Net\SSH2::getEncryptionAlgorithmsServer2Client()
+     * @see self::getEncryptionAlgorithmsServer2Client()
      * @var array|false
      * @access private
      */
@@ -258,7 +258,7 @@ class SSH2
     /**
      * MAC Algorithms: Client to Server
      *
-     * @see \phpseclib\Net\SSH2::getMACAlgorithmsClient2Server()
+     * @see self::getMACAlgorithmsClient2Server()
      * @var array|false
      * @access private
      */
@@ -267,7 +267,7 @@ class SSH2
     /**
      * MAC Algorithms: Server to Client
      *
-     * @see \phpseclib\Net\SSH2::getMACAlgorithmsServer2Client()
+     * @see self::getMACAlgorithmsServer2Client()
      * @var array|false
      * @access private
      */
@@ -276,7 +276,7 @@ class SSH2
     /**
      * Compression Algorithms: Client to Server
      *
-     * @see \phpseclib\Net\SSH2::getCompressionAlgorithmsClient2Server()
+     * @see self::getCompressionAlgorithmsClient2Server()
      * @var array|false
      * @access private
      */
@@ -285,7 +285,7 @@ class SSH2
     /**
      * Compression Algorithms: Server to Client
      *
-     * @see \phpseclib\Net\SSH2::getCompressionAlgorithmsServer2Client()
+     * @see self::getCompressionAlgorithmsServer2Client()
      * @var array|false
      * @access private
      */
@@ -294,7 +294,7 @@ class SSH2
     /**
      * Languages: Server to Client
      *
-     * @see \phpseclib\Net\SSH2::getLanguagesServer2Client()
+     * @see self::getLanguagesServer2Client()
      * @var array|false
      * @access private
      */
@@ -303,7 +303,7 @@ class SSH2
     /**
      * Languages: Client to Server
      *
-     * @see \phpseclib\Net\SSH2::getLanguagesClient2Server()
+     * @see self::getLanguagesClient2Server()
      * @var array|false
      * @access private
      */
@@ -319,8 +319,8 @@ class SSH2
      *
      *  -- http://tools.ietf.org/html/rfc4253#section-6
      *
-     * @see \phpseclib\Net\SSH2::__construct()
-     * @see \phpseclib\Net\SSH2::_send_binary_packet()
+     * @see self::__construct()
+     * @see self::_send_binary_packet()
      * @var int
      * @access private
      */
@@ -329,8 +329,8 @@ class SSH2
     /**
      * Block Size for Client to Server Encryption
      *
-     * @see \phpseclib\Net\SSH2::__construct()
-     * @see \phpseclib\Net\SSH2::_get_binary_packet()
+     * @see self::__construct()
+     * @see self::_get_binary_packet()
      * @var int
      * @access private
      */
@@ -339,7 +339,7 @@ class SSH2
     /**
      * Server to Client Encryption Object
      *
-     * @see \phpseclib\Net\SSH2::_get_binary_packet()
+     * @see self::_get_binary_packet()
      * @var object
      * @access private
      */
@@ -348,7 +348,7 @@ class SSH2
     /**
      * Client to Server Encryption Object
      *
-     * @see \phpseclib\Net\SSH2::_send_binary_packet()
+     * @see self::_send_binary_packet()
      * @var object
      * @access private
      */
@@ -357,7 +357,7 @@ class SSH2
     /**
      * Client to Server HMAC Object
      *
-     * @see \phpseclib\Net\SSH2::_send_binary_packet()
+     * @see self::_send_binary_packet()
      * @var object
      * @access private
      */
@@ -366,7 +366,7 @@ class SSH2
     /**
      * Server to Client HMAC Object
      *
-     * @see \phpseclib\Net\SSH2::_get_binary_packet()
+     * @see self::_get_binary_packet()
      * @var object
      * @access private
      */
@@ -379,7 +379,7 @@ class SSH2
      * For the client to server side, the HMAC object will make the HMAC as long as it needs to be.  All we need to do is
      * append it.
      *
-     * @see \phpseclib\Net\SSH2::_get_binary_packet()
+     * @see self::_get_binary_packet()
      * @var int
      * @access private
      */
@@ -388,7 +388,7 @@ class SSH2
     /**
      * Server Public Host Key
      *
-     * @see \phpseclib\Net\SSH2::getServerPublicHostKey()
+     * @see self::getServerPublicHostKey()
      * @var string
      * @access private
      */
@@ -403,7 +403,7 @@ class SSH2
      *
      *  -- http://tools.ietf.org/html/rfc4253#section-7.2
      *
-     * @see \phpseclib\Net\SSH2::_key_exchange()
+     * @see self::_key_exchange()
      * @var string
      * @access private
      */
@@ -414,7 +414,7 @@ class SSH2
      *
      * The current exchange hash
      *
-     * @see \phpseclib\Net\SSH2::_key_exchange()
+     * @see self::_key_exchange()
      * @var string
      * @access private
      */
@@ -423,7 +423,7 @@ class SSH2
     /**
      * Message Numbers
      *
-     * @see \phpseclib\Net\SSH2::__construct()
+     * @see self::__construct()
      * @var array
      * @access private
      */
@@ -432,7 +432,7 @@ class SSH2
     /**
      * Disconnection Message 'reason codes' defined in RFC4253
      *
-     * @see \phpseclib\Net\SSH2::__construct()
+     * @see self::__construct()
      * @var array
      * @access private
      */
@@ -441,7 +441,7 @@ class SSH2
     /**
      * SSH_MSG_CHANNEL_OPEN_FAILURE 'reason codes', defined in RFC4254
      *
-     * @see \phpseclib\Net\SSH2::__construct()
+     * @see self::__construct()
      * @var array
      * @access private
      */
@@ -451,7 +451,7 @@ class SSH2
      * Terminal Modes
      *
      * @link http://tools.ietf.org/html/rfc4254#section-8
-     * @see \phpseclib\Net\SSH2::__construct()
+     * @see self::__construct()
      * @var array
      * @access private
      */
@@ -461,7 +461,7 @@ class SSH2
      * SSH_MSG_CHANNEL_EXTENDED_DATA's data_type_codes
      *
      * @link http://tools.ietf.org/html/rfc4254#section-5.2
-     * @see \phpseclib\Net\SSH2::__construct()
+     * @see self::__construct()
      * @var array
      * @access private
      */
@@ -472,7 +472,7 @@ class SSH2
      *
      * See 'Section 6.4.  Data Integrity' of rfc4253 for more info.
      *
-     * @see \phpseclib\Net\SSH2::_send_binary_packet()
+     * @see self::_send_binary_packet()
      * @var int
      * @access private
      */
@@ -483,7 +483,7 @@ class SSH2
      *
      * See 'Section 6.4.  Data Integrity' of rfc4253 for more info.
      *
-     * @see \phpseclib\Net\SSH2::_get_binary_packet()
+     * @see self::_get_binary_packet()
      * @var int
      * @access private
      */
@@ -494,8 +494,8 @@ class SSH2
      *
      * Maps client channels to server channels
      *
-     * @see \phpseclib\Net\SSH2::_get_channel_packet()
-     * @see \phpseclib\Net\SSH2::exec()
+     * @see self::_get_channel_packet()
+     * @see self::exec()
      * @var array
      * @access private
      */
@@ -507,8 +507,8 @@ class SSH2
      * If a client requests a packet from one channel but receives two packets from another those packets should
      * be placed in a buffer
      *
-     * @see \phpseclib\Net\SSH2::_get_channel_packet()
-     * @see \phpseclib\Net\SSH2::exec()
+     * @see self::_get_channel_packet()
+     * @see self::exec()
      * @var array
      * @access private
      */
@@ -519,7 +519,7 @@ class SSH2
      *
      * Contains the type of the last sent message
      *
-     * @see \phpseclib\Net\SSH2::_get_channel_packet()
+     * @see self::_get_channel_packet()
      * @var array
      * @access private
      */
@@ -530,7 +530,7 @@ class SSH2
      *
      * Maximum packet size indexed by channel
      *
-     * @see \phpseclib\Net\SSH2::_send_channel_packet()
+     * @see self::_send_channel_packet()
      * @var array
      * @access private
      */
@@ -539,7 +539,7 @@ class SSH2
     /**
      * Message Number Log
      *
-     * @see \phpseclib\Net\SSH2::getLog()
+     * @see self::getLog()
      * @var array
      * @access private
      */
@@ -548,7 +548,7 @@ class SSH2
     /**
      * Message Log
      *
-     * @see \phpseclib\Net\SSH2::getLog()
+     * @see self::getLog()
      * @var array
      * @access private
      */
@@ -560,8 +560,8 @@ class SSH2
      * Bytes the other party can send before it must wait for the window to be adjusted (0x7FFFFFFF = 2GB)
      *
      * @var int
-     * @see \phpseclib\Net\SSH2::_send_channel_packet()
-     * @see \phpseclib\Net\SSH2::exec()
+     * @see self::_send_channel_packet()
+     * @see self::exec()
      * @access private
      */
     var $window_size = 0x7FFFFFFF;
@@ -571,7 +571,7 @@ class SSH2
      *
      * Window size indexed by channel
      *
-     * @see \phpseclib\Net\SSH2::_send_channel_packet()
+     * @see self::_send_channel_packet()
      * @var array
      * @access private
      */
@@ -582,7 +582,7 @@ class SSH2
      *
      * Window size indexed by channel
      *
-     * @see \phpseclib\Net\SSH2::_get_channel_packet()
+     * @see self::_get_channel_packet()
      * @var array
      * @access private
      */
@@ -593,7 +593,7 @@ class SSH2
      *
      * Verified against $this->session_id
      *
-     * @see \phpseclib\Net\SSH2::getServerPublicHostKey()
+     * @see self::getServerPublicHostKey()
      * @var string
      * @access private
      */
@@ -604,7 +604,7 @@ class SSH2
      *
      * ssh-rsa or ssh-dss.
      *
-     * @see \phpseclib\Net\SSH2::getServerPublicHostKey()
+     * @see self::getServerPublicHostKey()
      * @var string
      * @access private
      */
@@ -613,7 +613,7 @@ class SSH2
     /**
      * Interactive Buffer
      *
-     * @see \phpseclib\Net\SSH2::read()
+     * @see self::read()
      * @var array
      * @access private
      */
@@ -624,8 +624,8 @@ class SSH2
      *
      * Should never exceed self::LOG_MAX_SIZE
      *
-     * @see \phpseclib\Net\SSH2::_send_binary_packet()
-     * @see \phpseclib\Net\SSH2::_get_binary_packet()
+     * @see self::_send_binary_packet()
+     * @see self::_get_binary_packet()
      * @var int
      * @access private
      */
@@ -634,7 +634,7 @@ class SSH2
     /**
      * Timeout
      *
-     * @see \phpseclib\Net\SSH2::setTimeout()
+     * @see self::setTimeout()
      * @access private
      */
     var $timeout;
@@ -642,7 +642,7 @@ class SSH2
     /**
      * Current Timeout
      *
-     * @see \phpseclib\Net\SSH2::_get_channel_packet()
+     * @see self::_get_channel_packet()
      * @access private
      */
     var $curTimeout;
@@ -650,7 +650,7 @@ class SSH2
     /**
      * Real-time log file pointer
      *
-     * @see \phpseclib\Net\SSH2::_append_log()
+     * @see self::_append_log()
      * @var resource
      * @access private
      */
@@ -659,7 +659,7 @@ class SSH2
     /**
      * Real-time log file size
      *
-     * @see \phpseclib\Net\SSH2::_append_log()
+     * @see self::_append_log()
      * @var int
      * @access private
      */
@@ -668,7 +668,7 @@ class SSH2
     /**
      * Has the signature been validated?
      *
-     * @see \phpseclib\Net\SSH2::getServerPublicHostKey()
+     * @see self::getServerPublicHostKey()
      * @var bool
      * @access private
      */
@@ -677,7 +677,7 @@ class SSH2
     /**
      * Real-time log file wrap boolean
      *
-     * @see \phpseclib\Net\SSH2::_append_log()
+     * @see self::_append_log()
      * @access private
      */
     var $realtime_log_wrap;
@@ -685,7 +685,7 @@ class SSH2
     /**
      * Flag to suppress stderr from output
      *
-     * @see \phpseclib\Net\SSH2::enableQuietMode()
+     * @see self::enableQuietMode()
      * @access private
      */
     var $quiet_mode = false;
@@ -710,7 +710,7 @@ class SSH2
      * Flag to request a PTY when using exec()
      *
      * @var bool
-     * @see \phpseclib\Net\SSH2::enablePTY()
+     * @see self::enablePTY()
      * @access private
      */
     var $request_pty = false;
@@ -742,7 +742,7 @@ class SSH2
     /**
      * The Last Interactive Response
      *
-     * @see \phpseclib\Net\SSH2::_keyboard_interactive_process()
+     * @see self::_keyboard_interactive_process()
      * @var string
      * @access private
      */
@@ -751,7 +751,7 @@ class SSH2
     /**
      * Keyboard Interactive Request / Responses
      *
-     * @see \phpseclib\Net\SSH2::_keyboard_interactive_process()
+     * @see self::_keyboard_interactive_process()
      * @var array
      * @access private
      */
@@ -763,8 +763,8 @@ class SSH2
      * Quoting from the RFC, "in some jurisdictions, sending a warning message before
      * authentication may be relevant for getting legal protection."
      *
-     * @see \phpseclib\Net\SSH2::_filter()
-     * @see \phpseclib\Net\SSH2::getBannerMessage()
+     * @see self::_filter()
+     * @see self::getBannerMessage()
      * @var string
      * @access private
      */
@@ -773,7 +773,7 @@ class SSH2
     /**
      * Did read() timeout or return normally?
      *
-     * @see \phpseclib\Net\SSH2::isTimeout()
+     * @see self::isTimeout()
      * @var bool
      * @access private
      */
@@ -782,7 +782,7 @@ class SSH2
     /**
      * Log Boundary
      *
-     * @see \phpseclib\Net\SSH2::_format_log()
+     * @see self::_format_log()
      * @var string
      * @access private
      */
@@ -791,7 +791,7 @@ class SSH2
     /**
      * Log Long Width
      *
-     * @see \phpseclib\Net\SSH2::_format_log()
+     * @see self::_format_log()
      * @var int
      * @access private
      */
@@ -800,7 +800,7 @@ class SSH2
     /**
      * Log Short Width
      *
-     * @see \phpseclib\Net\SSH2::_format_log()
+     * @see self::_format_log()
      * @var int
      * @access private
      */
@@ -809,8 +809,8 @@ class SSH2
     /**
      * Hostname
      *
-     * @see \phpseclib\Net\SSH2::__construct()
-     * @see \phpseclib\Net\SSH2::_connect()
+     * @see self::__construct()
+     * @see self::_connect()
      * @var string
      * @access private
      */
@@ -819,8 +819,8 @@ class SSH2
     /**
      * Port Number
      *
-     * @see \phpseclib\Net\SSH2::__construct()
-     * @see \phpseclib\Net\SSH2::_connect()
+     * @see self::__construct()
+     * @see self::_connect()
      * @var int
      * @access private
      */
@@ -829,9 +829,9 @@ class SSH2
     /**
      * Number of columns for terminal window size
      *
-     * @see \phpseclib\Net\SSH2::getWindowColumns()
-     * @see \phpseclib\Net\SSH2::setWindowColumns()
-     * @see \phpseclib\Net\SSH2::setWindowSize()
+     * @see self::getWindowColumns()
+     * @see self::setWindowColumns()
+     * @see self::setWindowSize()
      * @var int
      * @access private
      */
@@ -840,9 +840,9 @@ class SSH2
     /**
      * Number of columns for terminal window size
      *
-     * @see \phpseclib\Net\SSH2::getWindowRows()
-     * @see \phpseclib\Net\SSH2::setWindowRows()
-     * @see \phpseclib\Net\SSH2::setWindowSize()
+     * @see self::getWindowRows()
+     * @see self::setWindowRows()
+     * @see self::setWindowSize()
      * @var int
      * @access private
      */
@@ -851,8 +851,8 @@ class SSH2
     /**
      * Crypto Engine
      *
-     * @see Net_SSH2::setCryptoEngine()
-     * @see Net_SSH2::_key_exchange()
+     * @see self::setCryptoEngine()
+     * @see self::_key_exchange()
      * @var int
      * @access private
      */
@@ -874,7 +874,7 @@ class SSH2
      * @param mixed $host
      * @param int $port
      * @param int $timeout
-     * @see \phpseclib\Net\SSH2::login()
+     * @see self::login()
      * @return \phpseclib\Net\SSH2
      * @access public
      */
@@ -1845,7 +1845,7 @@ class SSH2
      * @param mixed $password
      * @param mixed $...
      * @return bool
-     * @see _login
+     * @see self::_login()
      * @access public
      */
     function login($username)
@@ -1861,7 +1861,7 @@ class SSH2
      * @param mixed $password
      * @param mixed $...
      * @return bool
-     * @see _login_helper
+     * @see self::_login_helper()
      * @access private
      */
     function _login($username)
@@ -2507,8 +2507,8 @@ class SSH2
     /**
      * Creates an interactive shell
      *
-     * @see \phpseclib\Net\SSH2::read()
-     * @see \phpseclib\Net\SSH2::write()
+     * @see self::read()
+     * @see self::write()
      * @return bool
      * @access private
      */
@@ -2611,8 +2611,8 @@ class SSH2
     /**
      * Return the channel to be used with read() / write()
      *
-     * @see \phpseclib\Net\SSH2::read()
-     * @see \phpseclib\Net\SSH2::write()
+     * @see self::read()
+     * @see self::write()
      * @return int
      * @access public
      */
@@ -2652,7 +2652,7 @@ class SSH2
      * Returns when there's a match for $expect, which can take the form of a string literal or,
      * if $mode == self::READ_REGEX, a regular expression.
      *
-     * @see \phpseclib\Net\SSH2::write()
+     * @see self::write()
      * @param string $expect
      * @param int $mode
      * @return string
@@ -2698,7 +2698,7 @@ class SSH2
     /**
      * Inputs a command into an interactive shell.
      *
-     * @see \phpseclib\Net\SSH2::read()
+     * @see self::read()
      * @param string $cmd
      * @return bool
      * @access public
@@ -2727,7 +2727,7 @@ class SSH2
      * returns that and then that that was passed into stopSubsystem() but that'll be saved for a future date and implemented
      * if there's sufficient demand for such a feature.
      *
-     * @see \phpseclib\Net\SSH2::stopSubsystem()
+     * @see self::stopSubsystem()
      * @param string $subsystem
      * @return bool
      * @access public
@@ -2790,7 +2790,7 @@ class SSH2
     /**
      * Stops a subsystem.
      *
-     * @see \phpseclib\Net\SSH2::startSubsystem()
+     * @see self::startSubsystem()
      * @return bool
      * @access public
      */
@@ -2867,7 +2867,7 @@ class SSH2
      *
      * See '6. Binary Packet Protocol' of rfc4253 for more info.
      *
-     * @see \phpseclib\Net\SSH2::_send_binary_packet()
+     * @see self::_send_binary_packet()
      * @return string
      * @access private
      */
@@ -2960,7 +2960,7 @@ class SSH2
      *
      * Because some binary packets need to be ignored...
      *
-     * @see \phpseclib\Net\SSH2::_get_binary_packet()
+     * @see self::_get_binary_packet()
      * @return string
      * @access private
      */
@@ -3109,9 +3109,8 @@ class SSH2
     /**
      * Returns whether Quiet Mode is enabled or not
      *
-     * @see \phpseclib\Net\SSH2::enableQuietMode()
-     * @see \phpseclib\Net\SSH2::disableQuietMode()
-     *
+     * @see self::enableQuietMode()
+     * @see self::disableQuietMode()
      * @access public
      * @return bool
      */
@@ -3143,9 +3142,8 @@ class SSH2
     /**
      * Returns whether request-pty is enabled or not
      *
-     * @see \phpseclib\Net\SSH2::enablePTY()
-     * @see \phpseclib\Net\SSH2::disablePTY()
-     *
+     * @see self::enablePTY()
+     * @see self::disablePTY()
      * @access public
      * @return bool
      */
@@ -3377,7 +3375,7 @@ class SSH2
      *
      * @param string $data
      * @param string $logged
-     * @see \phpseclib\Net\SSH2::_get_binary_packet()
+     * @see self::_get_binary_packet()
      * @return bool
      * @access private
      */
diff --git a/phpseclib/System/SSH/Agent/Identity.php b/phpseclib/System/SSH/Agent/Identity.php
index f52bc31c..790b267c 100644
--- a/phpseclib/System/SSH/Agent/Identity.php
+++ b/phpseclib/System/SSH/Agent/Identity.php
@@ -38,7 +38,7 @@ class Identity
      *
      * @var \phpseclib\Crypt\RSA
      * @access private
-     * @see \phpseclib\System\SSH\Agent\Identity::getPublicKey()
+     * @see self::getPublicKey()
      */
     var $key;
 
@@ -47,7 +47,7 @@ class Identity
      *
      * @var string
      * @access private
-     * @see \phpseclib\System\SSH\Agent\Identity::sign()
+     * @see self::sign()
      */
     var $key_blob;
 
@@ -56,7 +56,7 @@ class Identity
      *
      * @var resource
      * @access private
-     * @see \phpseclib\System\SSH\Agent\Identity::sign()
+     * @see self::sign()
      */
     var $fsock;