php-ml/docs/machine-learning/clustering/dbscan.md
2016-05-02 13:49:19 +02:00

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DBSCAN clustering

It is a density-based clustering algorithm: given a set of points in some space, it groups together points that are closely packed together (points with many nearby neighbors), marking as outliers points that lie alone in low-density regions (whose nearest neighbors are too far away). DBSCAN is one of the most common clustering algorithms and also most cited in scientific literature. (source: wikipedia)

Constructor Parameters

  • $epsilon - epsilon, maximum distance between two samples for them to be considered as in the same neighborhood
  • $minSamples - number of samples in a neighborhood for a point to be considered as a core point (this includes the point itself)
  • $distanceMetric - Distance object, default Euclidean (see distance documentation)
$dbscan = new DBSCAN($epsilon = 2, $minSamples = 3);
$dbscan = new DBSCAN($epsilon = 2, $minSamples = 3, new Minkowski($lambda=4));

Clustering

To divide the samples into clusters simply use cluster method. It's return the array of clusters with samples inside.

$samples = [[1, 1], [8, 7], [1, 2], [7, 8], [2, 1], [8, 9]];

$dbscan = new DBSCAN($epsilon = 2, $minSamples = 3);
$dbscan->cluster($samples);
// return [0=>[[1, 1], ...], 1=>[[8, 7], ...]]